Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SUT_RS01530 Genome accession   NZ_AP025331
Coordinates   276365..277078 (+) Length   237 a.a.
NCBI ID   WP_024531595.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-183     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 271365..282078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUT_RS01520 (GUT183_02770) treC 272384..274015 (-) 1632 WP_024531593.1 alpha,alpha-phosphotrehalase -
  SUT_RS01525 (GUT183_02780) treP 274138..276141 (-) 2004 WP_155973584.1 PTS system trehalose-specific EIIBC component -
  SUT_RS01530 (GUT183_02790) treR 276365..277078 (+) 714 WP_024531595.1 trehalose operon repressor Regulator
  SUT_RS01535 (GUT183_02800) - 277134..277445 (+) 312 WP_024531596.1 hypothetical protein -
  SUT_RS01540 (GUT183_02810) - 277442..277990 (+) 549 WP_024531597.1 CvpA family protein -
  SUT_RS01545 (GUT183_02820) - 278117..280450 (+) 2334 WP_120171266.1 endonuclease MutS2 -
  SUT_RS01550 (GUT183_02830) - 280496..281140 (+) 645 WP_024531599.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27391.37 Da        Isoelectric Point: 8.9094

>NTDB_id=91122 SUT_RS01530 WP_024531595.1 276365..277078(+) (treR) [Streptococcus ruminantium strain GUT-183]
MKKYQEIYNDLKEKIRTNVYLAETSLPTEQELQKIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPISGLT
SYQELTDSLQLSTQTKVVHLDMITVDSSLSSLTGFETYSKVWKVIRTRSIDGKVSVVDTDYLSVDVVPKLTVDVAEKSIY
EYLENELGLDIAYAQKEITVEPTNREERRLLKAQDDYLVLIKSRVYLGDTRQFQYTESRHKIDKFRFVDFARRKRTL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91122 SUT_RS01530 WP_024531595.1 276365..277078(+) (treR) [Streptococcus ruminantium strain GUT-183]
ATGAAAAAGTATCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTACCTAGCGGAAACTTCCTTGCC
TACAGAACAAGAACTTCAGAAAATTTACGGTGTCAGTCGCGATACTGTTCGTAAGGCCTTAGCCATTTTGACAGAGGGTG
GTCTGATTCAAAAGGTTCAGGGACGTGGCTCCATGGTTCTCAAGCAGGAAATTCTTAACTTTCCTATCTCAGGTCTGACT
TCCTATCAGGAATTAACAGATTCTCTTCAATTATCTACACAGACGAAGGTTGTTCACTTGGATATGATAACGGTTGATTC
TAGCCTTTCCAGTCTGACAGGTTTTGAGACTTACAGTAAGGTATGGAAAGTTATCCGTACACGTTCTATTGATGGAAAAG
TCTCTGTTGTGGATACAGATTATCTTTCTGTAGATGTGGTACCAAAGTTGACGGTGGATGTTGCTGAGAAGTCTATTTAC
GAATATCTGGAAAATGAGCTAGGCCTAGACATAGCATATGCACAAAAGGAAATCACCGTAGAGCCAACCAATCGAGAAGA
ACGCAGATTGTTGAAGGCGCAGGATGACTATTTGGTCTTAATCAAGTCGCGTGTCTATCTCGGTGATACCAGGCAGTTCC
AATACACAGAAAGTAGACACAAGATTGATAAATTCCGCTTTGTGGATTTTGCCCGCAGAAAGCGAACTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.119

99.578

0.519

Multiple sequence alignment