Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SUT_RS01115 | Genome accession | NZ_AP025331 |
| Coordinates | 169183..170136 (+) | Length | 317 a.a. |
| NCBI ID | WP_237373379.1 | Uniprot ID | - |
| Organism | Streptococcus ruminantium strain GUT-183 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 164183..175136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SUT_RS01075 (GUT183_01890) | - | 165182..166144 (+) | 963 | WP_237373376.1 | Abi family protein | - |
| SUT_RS01080 (GUT183_01900) | - | 166346..167119 (-) | 774 | WP_336512695.1 | DNA/RNA non-specific endonuclease | - |
| SUT_RS01085 (GUT183_01910) | prx | 167259..167447 (+) | 189 | WP_237373378.1 | Paratox | Regulator |
| SUT_RS01090 (GUT183_01920) | comYC | 167468..167701 (+) | 234 | WP_156009628.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SUT_RS01095 (GUT183_01930) | comGD | 167688..168101 (+) | 414 | WP_024532253.1 | competence type IV pilus minor pilin ComGD | - |
| SUT_RS01100 (GUT183_01940) | comYE | 168073..168366 (+) | 294 | WP_155963927.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SUT_RS01105 (GUT183_01950) | comGF/cglF | 168353..168787 (+) | 435 | WP_024532251.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SUT_RS01110 (GUT183_01960) | comGG | 168765..169178 (+) | 414 | WP_120171207.1 | competence type IV pilus minor pilin ComGG | - |
| SUT_RS01115 (GUT183_01970) | comYH | 169183..170136 (+) | 954 | WP_237373379.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SUT_RS01120 (GUT183_01980) | - | 170186..171373 (+) | 1188 | WP_237373380.1 | acetate kinase | - |
| SUT_RS01125 (GUT183_01990) | - | 171678..172232 (+) | 555 | WP_024532247.1 | folate family ECF transporter S component | - |
| SUT_RS01130 (GUT183_02000) | - | 172331..173587 (+) | 1257 | WP_237373382.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| SUT_RS01135 (GUT183_02010) | pepA | 173901..174962 (-) | 1062 | WP_155971108.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35809.91 Da Isoelectric Point: 4.4003
>NTDB_id=91119 SUT_RS01115 WP_237373379.1 169183..170136(+) (comYH) [Streptococcus ruminantium strain GUT-183]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLVARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSASIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFILQKQTARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLVARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSASIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFILQKQTARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=91119 SUT_RS01115 WP_237373379.1 169183..170136(+) (comYH) [Streptococcus ruminantium strain GUT-183]
ATGAATTTTGAAAAGATTGAACAGGCCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTATGTAGCTGGCCAGCATGAGATTGATTTGGTTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACCAAGGAAGAATGGCGTCGTTCCTATCAATTTCTCTTAATCAAGGCCAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACTCCACGAGTGACAATCTTAGAAATCGGATCAGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCAGTATCGCAGATGTCATGGAGGCGGAA
ATTAGCTTTGCTCAAGGTGATGCAGTGCGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCTATTGAAAATCTGGCTACAGGAGCAGGCCAATATTGTAGCTATGATTGCTCTTCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTATTCTACAAAAACAAACAGCGAGAGCATTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTAA
ATGAATTTTGAAAAGATTGAACAGGCCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTATGTAGCTGGCCAGCATGAGATTGATTTGGTTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACCAAGGAAGAATGGCGTCGTTCCTATCAATTTCTCTTAATCAAGGCCAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACTCCACGAGTGACAATCTTAGAAATCGGATCAGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCAGTATCGCAGATGTCATGGAGGCGGAA
ATTAGCTTTGCTCAAGGTGATGCAGTGCGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCTATTGAAAATCTGGCTACAGGAGCAGGCCAATATTGTAGCTATGATTGCTCTTCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTATTCTACAAAAACAAACAGCGAGAGCATTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.076 |
99.685 |
0.609 |
| comYH | Streptococcus mutans UA159 |
60.759 |
99.685 |
0.606 |