Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABQ274_RS08620 Genome accession   NZ_CP159281
Coordinates   1766608..1767363 (-) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain FNZ339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1761608..1772363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS08600 (ABQ274_08600) - 1762067..1763047 (+) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -
  ABQ274_RS08605 (ABQ274_08605) - 1763040..1764638 (+) 1599 WP_010905075.1 2-oxo acid dehydrogenase subunit E2 -
  ABQ274_RS08610 (ABQ274_08610) lpdA 1764832..1766250 (+) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  ABQ274_RS08615 (ABQ274_08615) - 1766321..1766494 (-) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  ABQ274_RS08620 (ABQ274_08620) recO 1766608..1767363 (-) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  ABQ274_RS08625 (ABQ274_08625) - 1767462..1768637 (-) 1176 WP_023163562.1 pyridoxal phosphate-dependent aminotransferase -
  ABQ274_RS08635 (ABQ274_08635) - 1769101..1769622 (-) 522 WP_010905072.1 N-acetyltransferase -
  ABQ274_RS08640 (ABQ274_08640) - 1769832..1771454 (+) 1623 WP_023163561.1 SulP family inorganic anion transporter -
  ABQ274_RS08645 (ABQ274_08645) - 1771535..1771777 (-) 243 WP_010905065.1 TM2 domain-containing protein -
  ABQ274_RS08650 (ABQ274_08650) - 1771854..1772303 (-) 450 WP_010905064.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=911182 ABQ274_RS08620 WP_003132217.1 1766608..1767363(-) (recO) [Lactococcus lactis strain FNZ339]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=911182 ABQ274_RS08620 WP_003132217.1 1766608..1767363(-) (recO) [Lactococcus lactis strain FNZ339]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGACTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534