Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   U0543_RS02835 Genome accession   NZ_CP139836
Coordinates   582731..583111 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B84     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577731..588111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS02805 (U0543_02805) tadA 577849..578352 (-) 504 Protein_557 tRNA adenosine(34) deaminase TadA -
  U0543_RS02810 (U0543_02810) - 578359..579483 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  U0543_RS02815 (U0543_02815) ung 579480..580193 (-) 714 WP_029424376.1 uracil-DNA glycosylase -
  U0543_RS02820 (U0543_02820) - 580244..580840 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  U0543_RS02825 (U0543_02825) gspK 581071..582030 (-) 960 WP_029424377.1 type II secretion system minor pseudopilin GspK -
  U0543_RS02830 (U0543_02830) xcpW 582030..582731 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  U0543_RS02835 (U0543_02835) xcpV 582731..583111 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  U0543_RS02840 (U0543_02840) - 583101..583655 (-) 555 WP_005128793.1 type II secretion system protein -
  U0543_RS02845 (U0543_02845) - 583665..584273 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  U0543_RS02850 (U0543_02850) - 584311..585084 (-) 774 WP_000497295.1 TatD family hydrolase -
  U0543_RS02855 (U0543_02855) - 585102..585443 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  U0543_RS02860 (U0543_02860) - 585455..586435 (-) 981 WP_001075409.1 DNA polymerase III subunit delta' -
  U0543_RS02865 (U0543_02865) kdsB 586447..587208 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=911182 U0543_RS02835 WP_000836911.1 582731..583111(-) (xcpV) [Acinetobacter baumannii strain B84]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=911182 U0543_RS02835 WP_000836911.1 582731..583111(-) (xcpV) [Acinetobacter baumannii strain B84]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1