Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABQ274_RS06850 Genome accession   NZ_CP159281
Coordinates   1419307..1420119 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain FNZ339     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414307..1425119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS06825 (ABQ274_06825) yaaT 1414360..1415142 (-) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  ABQ274_RS06830 (ABQ274_06830) - 1415194..1416054 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  ABQ274_RS06835 (ABQ274_06835) tmk 1416187..1416822 (-) 636 WP_012897230.1 dTMP kinase -
  ABQ274_RS06840 (ABQ274_06840) yycF 1417000..1417701 (+) 702 WP_003131580.1 response regulator YycF -
  ABQ274_RS06845 (ABQ274_06845) vicK 1417694..1419136 (+) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  ABQ274_RS06850 (ABQ274_06850) vicX 1419307..1420119 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  ABQ274_RS06855 (ABQ274_06855) groL 1420165..1421793 (-) 1629 WP_003131585.1 chaperonin GroEL -
  ABQ274_RS06860 (ABQ274_06860) groES 1421881..1422165 (-) 285 WP_003131589.1 co-chaperone GroES -
  ABQ274_RS06865 (ABQ274_06865) - 1422285..1422674 (-) 390 WP_023163755.1 single-stranded DNA-binding protein -
  ABQ274_RS06870 (ABQ274_06870) - 1422764..1424104 (-) 1341 WP_023163754.1 FAD-dependent oxidoreductase -
  ABQ274_RS06875 (ABQ274_06875) ytpR 1424267..1424893 (-) 627 WP_031559372.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=911169 ABQ274_RS06850 WP_003131583.1 1419307..1420119(+) (vicX) [Lactococcus lactis strain FNZ339]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=911169 ABQ274_RS06850 WP_003131583.1 1419307..1420119(+) (vicX) [Lactococcus lactis strain FNZ339]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685