Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   ABU973_RS13860 Genome accession   NZ_CP159170
Coordinates   2623493..2623723 (+) Length   76 a.a.
NCBI ID   WP_350027785.1    Uniprot ID   -
Organism   Escherichia coli strain 10035776-3     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618493..2628723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU973_RS13840 (ABU973_13840) cyaY 2620087..2620407 (-) 321 WP_000999947.1 iron donor protein CyaY -
  ABU973_RS13845 (ABU973_13845) - 2620455..2621780 (-) 1326 WP_001545050.1 hypothetical protein -
  ABU973_RS13850 (ABU973_13850) - 2621777..2622042 (-) 266 Protein_2494 DKNYY family protein -
  ABU973_RS13855 (ABU973_13855) - 2622894..2623502 (+) 609 WP_001545051.1 hypothetical protein -
  ABU973_RS13860 (ABU973_13860) tfoS 2623493..2623723 (+) 231 WP_350027785.1 helix-turn-helix transcriptional regulator Regulator
  ABU973_RS13865 (ABU973_13865) - 2624596..2627031 (-) 2436 WP_353640529.1 fimbria/pilus outer membrane usher protein -
  ABU973_RS13870 (ABU973_13870) - 2627024..2627725 (-) 702 WP_001545053.1 molecular chaperone -
  ABU973_RS13875 (ABU973_13875) - 2627780..2628226 (-) 447 WP_001545054.1 hypothetical protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8874.43 Da        Isoelectric Point: 11.2856

>NTDB_id=911094 ABU973_RS13860 WP_350027785.1 2623493..2623723(+) (tfoS) [Escherichia coli strain 10035776-3]
MYLSKSTLKRKLKAEGTTFSTIFLLARMKKAARLLRTNNNSIRAIAEECGFNNPSYFSTVFRKIFNTTPKKYRELF

Nucleotide


Download         Length: 231 bp        

>NTDB_id=911094 ABU973_RS13860 WP_350027785.1 2623493..2623723(+) (tfoS) [Escherichia coli strain 10035776-3]
ATATATCTAAGTAAATCAACGTTAAAAAGAAAGTTAAAAGCGGAAGGAACCACATTTTCTACAATCTTTCTCTTGGCTCG
AATGAAAAAAGCCGCAAGGCTACTCAGAACGAATAACAACTCCATTAGAGCCATTGCAGAAGAGTGTGGATTTAATAATC
CATCTTACTTTTCAACAGTTTTTAGAAAAATTTTTAATACAACCCCTAAGAAATATAGAGAATTATTTTAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(3-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

37.333

98.684

0.368