Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ABU973_RS07680 Genome accession   NZ_CP159170
Coordinates   1348117..1349109 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain 10035776-3     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343117..1354109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU973_RS07650 (ABU973_07650) - 1343589..1344452 (+) 864 WP_001223109.1 tetratricopeptide repeat protein -
  ABU973_RS07655 (ABU973_07655) pphB 1344477..1345133 (+) 657 WP_001139307.1 protein-serine/threonine phosphatase -
  ABU973_RS07660 (ABU973_07660) - 1345175..1345411 (-) 237 WP_000562983.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ABU973_RS07665 (ABU973_07665) - 1345422..1346849 (-) 1428 WP_001544891.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ABU973_RS07670 (ABU973_07670) - 1346849..1347442 (-) 594 WP_001521150.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ABU973_RS07675 (ABU973_07675) - 1347589..1347996 (+) 408 WP_001208066.1 MarR family transcriptional regulator -
  ABU973_RS07680 (ABU973_07680) rpoS 1348117..1349109 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ABU973_RS07685 (ABU973_07685) nlpD 1349172..1350266 (-) 1095 WP_306465305.1 murein hydrolase activator NlpD -
  ABU973_RS07690 (ABU973_07690) pcm 1350451..1351077 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ABU973_RS07695 (ABU973_07695) surE 1351071..1351832 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ABU973_RS07700 (ABU973_07700) truD 1351813..1352862 (-) 1050 WP_001544893.1 tRNA pseudouridine(13) synthase TruD -
  ABU973_RS07705 (ABU973_07705) ispF 1352859..1353338 (-) 480 WP_001544894.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABU973_RS07710 (ABU973_07710) ispD 1353338..1354048 (-) 711 WP_000246131.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=911064 ABU973_RS07680 WP_000081550.1 1348117..1349109(-) (rpoS) [Escherichia coli strain 10035776-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=911064 ABU973_RS07680 WP_000081550.1 1348117..1349109(-) (rpoS) [Escherichia coli strain 10035776-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCTATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715