Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SOM08_RS17155 Genome accession   NZ_CP139793
Coordinates   3568719..3569120 (-) Length   133 a.a.
NCBI ID   WP_175442774.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3563719..3574120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS17140 (SOM08_17140) - 3565475..3567733 (-) 2259 WP_116959323.1 methyl-accepting chemotaxis protein -
  SOM08_RS17145 (SOM08_17145) - 3567793..3568329 (-) 537 WP_322469367.1 chemotaxis protein CheW -
  SOM08_RS17150 (SOM08_17150) - 3568354..3568719 (-) 366 WP_070397331.1 response regulator -
  SOM08_RS17155 (SOM08_17155) pilG 3568719..3569120 (-) 402 WP_175442774.1 response regulator Regulator
  SOM08_RS17160 (SOM08_17160) - 3569214..3569387 (-) 174 WP_083292799.1 rubredoxin -
  SOM08_RS17165 (SOM08_17165) thiD 3569537..3570484 (+) 948 WP_070397330.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SOM08_RS17170 (SOM08_17170) hemL 3570492..3571793 (+) 1302 WP_116959319.1 glutamate-1-semialdehyde 2,1-aminomutase -
  SOM08_RS17175 (SOM08_17175) purH 3571880..3573466 (-) 1587 WP_322470713.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  SOM08_RS22525 - 3573493..3573730 (-) 238 Protein_3393 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14629.88 Da        Isoelectric Point: 7.1326

>NTDB_id=911049 SOM08_RS17155 WP_175442774.1 3568719..3569120(-) (pilG) [Hydrogenophaga sp. SNF1]
MSATPALKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKINDYQPDLIFCDILMPRLDGYQTCAIIKRNARFAS
IPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGAHLNVNGVA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=911049 SOM08_RS17155 WP_175442774.1 3568719..3569120(-) (pilG) [Hydrogenophaga sp. SNF1]
GTGAGTGCAACGCCTGCCCTGAAGGTTCTCGTCGTCGACGACAGCAACACCATCCGGCGCAGCGCCGAGATTTTTCTCAA
GCAAGGCGGCCATGAAGTGCTGCTGGCCGACGATGGCTTCGACGCCCTGGCCAAGATCAACGACTACCAGCCCGACCTGA
TCTTCTGCGACATCCTGATGCCGCGGCTGGACGGCTATCAGACCTGCGCGATCATCAAGCGCAATGCCCGCTTCGCCAGC
ATCCCGGTCGTCATGCTCTCGTCCAAGGACGGCGTGTTCGACAAGGCCCGCGGCCGCATGGTCGGCTCGCAGGACTACCT
CACCAAGCCCTTCACCAAAGACCAGCTGTTGCAGGCCGTGCAGCAGTTCGGCGCCCATCTCAACGTCAACGGAGTTGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.609

86.466

0.541