Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SOM08_RS16650 Genome accession   NZ_CP139793
Coordinates   3470798..3471871 (+) Length   357 a.a.
NCBI ID   WP_116959459.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3465798..3476871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS16620 (SOM08_16620) pth 3465929..3466579 (+) 651 WP_116959464.1 aminoacyl-tRNA hydrolase -
  SOM08_RS16625 (SOM08_16625) - 3466537..3466827 (-) 291 WP_116959463.1 YfhL family 4Fe-4S dicluster ferredoxin -
  SOM08_RS16630 (SOM08_16630) coaD 3466841..3467341 (-) 501 WP_070397426.1 pantetheine-phosphate adenylyltransferase -
  SOM08_RS16635 (SOM08_16635) rsmD 3467362..3467943 (-) 582 WP_116959462.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SOM08_RS16640 (SOM08_16640) - 3468061..3469395 (-) 1335 WP_322469337.1 pitrilysin family protein -
  SOM08_RS16645 (SOM08_16645) - 3469392..3470768 (-) 1377 WP_322469338.1 pitrilysin family protein -
  SOM08_RS16650 (SOM08_16650) pilA 3470798..3471871 (+) 1074 WP_116959459.1 signal recognition particle-docking protein FtsY Machinery gene
  SOM08_RS16655 (SOM08_16655) - 3471887..3472324 (-) 438 WP_322469339.1 hypothetical protein -
  SOM08_RS16660 (SOM08_16660) - 3472506..3472718 (-) 213 WP_116959457.1 zf-HC2 domain-containing protein -
  SOM08_RS16665 (SOM08_16665) - 3472715..3473287 (-) 573 WP_116959456.1 sigma-70 family RNA polymerase sigma factor -
  SOM08_RS16670 (SOM08_16670) - 3473429..3473710 (+) 282 WP_116959455.1 DUF2282 domain-containing protein -
  SOM08_RS16675 (SOM08_16675) - 3473733..3474635 (+) 903 WP_116959454.1 DUF692 domain-containing protein -
  SOM08_RS16680 (SOM08_16680) - 3474632..3475420 (+) 789 WP_116959453.1 DNA-binding domain-containing protein -
  SOM08_RS16685 (SOM08_16685) - 3475417..3475875 (+) 459 WP_116959452.1 DoxX family protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 37334.02 Da        Isoelectric Point: 6.9773

>NTDB_id=911048 SOM08_RS16650 WP_116959459.1 3470798..3471871(+) (pilA) [Hydrogenophaga sp. SNF1]
MFSFFRKKNPAPPPEAPAVQAPVGGPAAASAPPSAPAPVAVPAPVAAPLPAPVAAPAAPRQGWLDRLKSGLRRTGSGIAT
VFTGTRIDEDLYEELEAALLMADSGVSATQHLLNDLRRRVKEAKATEPAAVKALLAEAIADLLKPLQKPLVIGEHKPTVI
MVAGVNGAGKTTSIGKLTRHLADEGASVLLAAADTFRAAAREQLAVWADRNTVDIVTQEGGDPAAVCFDAVSAGRARGKD
VVLVDTAGRLPTQLHLMEELRKIKRVVNKADPTGPHEVLLVIDGNTGQNALAQVKAFDEALQLTGLVITKLDGTAKGGVL
CAIARERPVPVYFIGVGEKLEDLETFDAREYAQALLS

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=911048 SOM08_RS16650 WP_116959459.1 3470798..3471871(+) (pilA) [Hydrogenophaga sp. SNF1]
ATGTTCTCGTTCTTTCGCAAAAAAAATCCCGCGCCCCCGCCGGAGGCGCCGGCCGTCCAGGCCCCCGTCGGCGGTCCCGC
AGCGGCATCGGCCCCCCCATCGGCGCCGGCGCCCGTGGCGGTGCCAGCGCCCGTCGCCGCTCCCCTGCCCGCCCCGGTGG
CCGCGCCGGCGGCCCCGCGCCAGGGCTGGCTCGACCGCCTCAAGTCCGGCCTGCGGCGCACCGGCAGCGGCATCGCCACG
GTGTTCACGGGCACGCGCATCGACGAGGACCTGTACGAGGAACTCGAGGCCGCCCTGCTCATGGCCGACAGCGGCGTGTC
GGCCACGCAGCACCTGCTGAACGACCTGCGCCGCCGCGTGAAAGAAGCCAAGGCCACTGAGCCCGCCGCCGTGAAGGCCT
TGCTGGCCGAAGCCATCGCCGACCTGCTGAAGCCCTTGCAGAAGCCCCTGGTCATCGGCGAACACAAGCCCACGGTGATC
ATGGTCGCGGGCGTGAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACGCGCCACCTGGCCGACGAAGGCGCGAG
CGTGCTGCTGGCCGCCGCCGACACCTTCCGCGCGGCGGCGCGCGAACAGCTGGCGGTCTGGGCCGACCGCAACACCGTCG
ACATCGTCACCCAGGAAGGTGGCGACCCGGCCGCCGTGTGCTTCGACGCGGTGAGCGCCGGCCGGGCGCGCGGCAAGGAC
GTGGTGCTGGTCGACACCGCCGGCCGCCTGCCCACGCAGCTTCACCTGATGGAGGAGCTGCGCAAGATCAAGCGCGTGGT
GAACAAGGCCGACCCCACGGGGCCCCATGAAGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTCGCGCAGG
TCAAGGCCTTCGACGAGGCGCTGCAACTCACCGGCCTGGTCATCACCAAGCTGGATGGCACGGCCAAAGGCGGCGTGCTC
TGCGCCATCGCGCGCGAGCGGCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAGAAGCTCGAGGACCTGGAAACCTTCGA
CGCCCGCGAGTACGCGCAGGCCCTGCTGAGCTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(76-138)

SRP54-type protein, GTPase domain (SRP54)

(157-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.599

94.398

0.515