Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SOM08_RS01425 Genome accession   NZ_CP139793
Coordinates   294262..295641 (-) Length   459 a.a.
NCBI ID   WP_322469925.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 289262..300641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS01395 (SOM08_01395) rfbA 289665..290570 (-) 906 WP_322469922.1 glucose-1-phosphate thymidylyltransferase RfbA -
  SOM08_RS01400 (SOM08_01400) rfbD 290567..291469 (-) 903 WP_322469923.1 dTDP-4-dehydrorhamnose reductase -
  SOM08_RS01405 (SOM08_01405) rfbB 291466..292530 (-) 1065 WP_322469924.1 dTDP-glucose 4,6-dehydratase -
  SOM08_RS01410 (SOM08_01410) - 292585..292791 (-) 207 WP_070400247.1 zinc-finger domain-containing protein -
  SOM08_RS01415 (SOM08_01415) - 292804..293742 (-) 939 WP_070400248.1 branched-chain amino acid transaminase -
  SOM08_RS01420 (SOM08_01420) - 293787..294215 (-) 429 WP_116958900.1 glycerate kinase -
  SOM08_RS01425 (SOM08_01425) radA 294262..295641 (-) 1380 WP_322469925.1 DNA repair protein RadA Machinery gene
  SOM08_RS01430 (SOM08_01430) - 295652..296698 (-) 1047 WP_322469926.1 nitronate monooxygenase -
  SOM08_RS01435 (SOM08_01435) - 296753..297673 (-) 921 WP_116958897.1 LysR family transcriptional regulator -
  SOM08_RS01440 (SOM08_01440) - 297746..299401 (+) 1656 WP_116958896.1 FAD-dependent oxidoreductase -
  SOM08_RS01445 (SOM08_01445) - 299428..300411 (+) 984 WP_116958895.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48366.87 Da        Isoelectric Point: 7.7001

>NTDB_id=911037 SOM08_RS01425 WP_322469925.1 294262..295641(-) (radA) [Hydrogenophaga sp. SNF1]
MAKDKTIYTCGECGGTSPRWLGKCPHCAAWNTLVEGVAEGGGAPPKNRFAALAKTSEVMPLSRIEARDVQRTPTGHEELD
RVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDSLQRAGLPTLYVTGEESGAQVALRARRLGIEGSQVQVLAEIQLEKILA
TLDAEKPAIAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDTVLYFE
GDTHSSFRLIRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHAQPVPGSCVMVTLEGTRPLLVELQALVDSGGPS
PRRLSVGLERDRLAMLLAVLHRHAGVACLDQDVFVNAVGGVRISEPAADLGVMLAITSSLRGKPLPKGFLAFGEVGLAGE
VRPAPRGQERLKEAAKLGFSVAVVPKANLPKKNDKAFDGLTVHGVERIEEALDLVRRME

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=911037 SOM08_RS01425 WP_322469925.1 294262..295641(-) (radA) [Hydrogenophaga sp. SNF1]
ATGGCCAAGGACAAGACGATCTACACCTGCGGCGAGTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGCATTG
CGCCGCCTGGAACACGCTGGTGGAAGGCGTGGCCGAGGGCGGCGGCGCGCCGCCGAAGAACCGCTTCGCGGCGCTGGCCA
AGACCAGCGAGGTGATGCCGCTGTCGCGCATCGAGGCCCGGGACGTGCAACGCACGCCCACCGGCCACGAGGAGCTGGAC
CGCGTGCTGGGCGGGGGCATCGTCGAGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACCCTGCT
GCTGCAGGCCCTGGACAGCCTGCAGCGCGCCGGCCTGCCCACGCTCTACGTGACGGGCGAGGAGAGCGGCGCCCAGGTGG
CGCTGCGCGCGCGCCGCCTGGGCATCGAGGGCTCGCAGGTGCAGGTGCTGGCCGAGATCCAGCTGGAAAAAATCCTGGCC
ACGCTGGACGCCGAGAAGCCCGCCATCGCGGTGATCGACTCGATCCAGACCGTCTACTCCGACCAGCTCACCAGCGCGCC
GGGCTCGGTGGCGCAGGTGCGCGAATGCGCGGCCCACCTCACCCGCGCGGCCAAGGCCTCGGGCACGGCCATCGTGCTGG
TGGGCCATGTCACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTCTATTTCGAG
GGCGATACGCACAGCAGCTTCCGGCTGATCCGCGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGC
CATGACCGAGAAGGGCCTCAAGGGCGTGAGCAACCCGAGCGCGATCTTTCTCTCGCAGCACGCCCAGCCGGTGCCGGGCA
GTTGCGTGATGGTCACGCTGGAGGGCACGCGGCCGCTGCTGGTGGAACTGCAGGCCCTGGTGGACAGCGGCGGCCCCAGC
CCGCGCCGCCTGAGCGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGGCGTGGC
CTGCCTGGACCAGGACGTGTTCGTCAACGCCGTGGGGGGCGTGCGCATCAGCGAGCCCGCGGCCGACCTGGGCGTGATGC
TGGCCATCACCAGCAGCCTGCGCGGCAAGCCGCTGCCCAAGGGCTTCCTGGCCTTCGGCGAGGTGGGCCTGGCCGGCGAG
GTGCGGCCCGCGCCGCGCGGGCAGGAGCGCCTGAAAGAGGCGGCCAAACTGGGCTTTTCCGTGGCGGTGGTGCCCAAGGC
CAACCTGCCCAAGAAAAACGACAAGGCCTTCGACGGCCTCACCGTGCATGGGGTCGAGCGCATCGAAGAGGCGCTGGATC
TGGTGCGCCGGATGGAATGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(73-256)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.578

99.564

0.484
  radA Streptococcus pneumoniae Rx1

46.753

100

0.471
  radA Streptococcus pneumoniae D39

46.753

100

0.471
  radA Streptococcus pneumoniae TIGR4

46.753

100

0.471
  radA Streptococcus pneumoniae R6

46.753

100

0.471
  radA Streptococcus mitis NCTC 12261

46.537

100

0.468
  radA Streptococcus mitis SK321

48.028

93.9

0.451