Detailed information NTG0911013

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABU997_RS13650
• Genome accession: NZ_CP159152
• Coordinates: 2502376..2503368 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 10035210-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2497376..2508368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU997_RS13620 (ABU997_13625)	ispD	2497437..2498147 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABU997_RS13625 (ABU997_13630)	ispF	2498147..2498626 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABU997_RS13630 (ABU997_13635)	truD	2498623..2499672 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABU997_RS13635 (ABU997_13640)	surE	2499653..2500414 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABU997_RS13640 (ABU997_13645)	pcm	2500408..2501034 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABU997_RS13645 (ABU997_13650)	nlpD	2501219..2502313 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABU997_RS13650 (ABU997_13655)	rpoS	2502376..2503368 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABU997_RS13655 (ABU997_13660)	ygbN	2503462..2504826 (-)	1365	WP_000104456.1	GntP family transporter	-
ABU997_RS13660 (ABU997_13665)	ygbM	2504915..2505691 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ABU997_RS13665 (ABU997_13670)	ygbL	2505696..2506334 (-)	639	WP_001278994.1	aldolase	-
ABU997_RS13670 (ABU997_13675)	otnK	2506331..2507593 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=911013 ABU997_RS13650 WP_000081550.1 2502376..2503368(+) (rpoS) [Escherichia coli strain 10035210-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=911013 ABU997_RS13650 WP_000081550.1 2502376..2503368(+) (rpoS) [Escherichia coli strain 10035210-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715