Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HX0037_RS18215 Genome accession   NZ_CP139782
Coordinates   3699598..3700206 (-) Length   202 a.a.
NCBI ID   WP_094247938.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3694598..3705206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS18195 dnaD 3694833..3695531 (+) 699 WP_094247836.1 DNA replication protein DnaD -
  HX0037_RS18200 nth 3695550..3696209 (+) 660 WP_094247837.1 endonuclease III -
  HX0037_RS18205 - 3696206..3696697 (+) 492 WP_046559838.1 YpoC family protein -
  HX0037_RS18210 - 3696776..3699559 (-) 2784 WP_070082018.1 PBP1A family penicillin-binding protein -
  HX0037_RS18215 recU 3699598..3700206 (-) 609 WP_094247938.1 Holliday junction resolvase RecU Machinery gene
  HX0037_RS18220 - 3700248..3701210 (+) 963 WP_032861546.1 DUF2515 domain-containing protein -
  HX0037_RS18225 sspM 3701254..3701358 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  HX0037_RS18230 - 3701564..3701809 (+) 246 WP_094247838.1 DUF5446 family protein -
  HX0037_RS18235 - 3701855..3702223 (+) 369 WP_003153529.1 YppE family protein -
  HX0037_RS18240 - 3702262..3702444 (-) 183 WP_003153532.1 YppF family protein -
  HX0037_RS18245 - 3702631..3703032 (+) 402 WP_094247839.1 YppG family protein -
  HX0037_RS18250 - 3703062..3703475 (-) 414 WP_076851379.1 hypothetical protein -
  HX0037_RS18255 - 3703614..3704120 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23708.84 Da        Isoelectric Point: 9.6948

>NTDB_id=911011 HX0037_RS18215 WP_094247938.1 3699598..3700206(-) (recU) [Bacillus amyloliquefaciens strain HX0037]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKRPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=911011 HX0037_RS18215 WP_094247938.1 3699598..3700206(-) (recU) [Bacillus amyloliquefaciens strain HX0037]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAGGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891