Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HX0037_RS17150 Genome accession   NZ_CP139782
Coordinates   3453696..3454496 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448696..3459496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS17130 - 3448820..3449665 (+) 846 WP_003153172.1 TlyA family RNA methyltransferase -
  HX0037_RS17135 ahrC 3449760..3450209 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  HX0037_RS17140 recN 3450241..3451971 (+) 1731 WP_094247738.1 DNA repair protein RecN Machinery gene
  HX0037_RS17145 spoIVB 3452135..3453415 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  HX0037_RS17150 spo0A 3453696..3454496 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  HX0037_RS17155 alr 3454644..3455825 (-) 1182 WP_094247795.1 alanine racemase -
  HX0037_RS17160 - 3456001..3456213 (-) 213 WP_003153181.1 spore germination protein -
  HX0037_RS17165 - 3456340..3456552 (-) 213 WP_223883535.1 spore germination protein -
  HX0037_RS17170 - 3456679..3457797 (-) 1119 WP_094247935.1 NADH-dependent flavin oxidoreductase -
  HX0037_RS17175 - 3457891..3458028 (-) 138 WP_014470646.1 hypothetical protein -
  HX0037_RS17180 - 3458319..3458951 (-) 633 WP_014418348.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=911010 HX0037_RS17150 WP_003153177.1 3453696..3454496(+) (spo0A) [Bacillus amyloliquefaciens strain HX0037]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=911010 HX0037_RS17150 WP_003153177.1 3453696..3454496(+) (spo0A) [Bacillus amyloliquefaciens strain HX0037]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTTATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAACGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACCGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97