Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HX0037_RS16645 Genome accession   NZ_CP139782
Coordinates   3368462..3369229 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3363462..3374229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS16615 - 3363745..3365877 (+) 2133 WP_015387990.1 HD family phosphohydrolase -
  HX0037_RS16620 ybeY 3365878..3366351 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  HX0037_RS16625 - 3366332..3366706 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  HX0037_RS16630 - 3366830..3367240 (+) 411 WP_094247722.1 cytidine deaminase -
  HX0037_RS16635 era 3367221..3368126 (+) 906 WP_007408285.1 GTPase Era -
  HX0037_RS16640 - 3368282..3368425 (+) 144 WP_007408286.1 YqzL family protein -
  HX0037_RS16645 recO 3368462..3369229 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  HX0037_RS16650 glyQ 3369531..3370418 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  HX0037_RS16655 glyS 3370411..3372450 (+) 2040 WP_094247723.1 glycine--tRNA ligase subunit beta -
  HX0037_RS16660 ccpN 3372551..3373189 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  HX0037_RS16665 - 3373215..3374027 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=911000 HX0037_RS16645 WP_003152982.1 3368462..3369229(+) (recO) [Bacillus amyloliquefaciens strain HX0037]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=911000 HX0037_RS16645 WP_003152982.1 3368462..3369229(+) (recO) [Bacillus amyloliquefaciens strain HX0037]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGATCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCTAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894