Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HX0037_RS15805 Genome accession   NZ_CP139782
Coordinates   3216722..3217474 (+) Length   250 a.a.
NCBI ID   WP_094247691.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3211722..3222474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS15790 - 3211945..3212136 (-) 192 WP_003152639.1 hypothetical protein -
  HX0037_RS15795 - 3212589..3215231 (+) 2643 WP_094247689.1 valine--tRNA ligase -
  HX0037_RS15800 - 3215290..3216582 (+) 1293 WP_094247690.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  HX0037_RS15805 comC 3216722..3217474 (+) 753 WP_094247691.1 prepilin peptidase Machinery gene
  HX0037_RS15810 - 3217601..3218602 (+) 1002 WP_146277259.1 SPOR domain-containing protein -
  HX0037_RS15815 - 3218743..3219312 (+) 570 WP_070082167.1 Maf family protein -
  HX0037_RS15820 radC 3219344..3220039 (+) 696 WP_007408165.1 RadC family protein -
  HX0037_RS15825 mreB 3220131..3221144 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HX0037_RS15830 mreC 3221175..3222038 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27030.62 Da        Isoelectric Point: 9.2521

>NTDB_id=910993 HX0037_RS15805 WP_094247691.1 3216722..3217474(+) (comC) [Bacillus amyloliquefaciens strain HX0037]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLTALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=910993 HX0037_RS15805 WP_094247691.1 3216722..3217474(+) (comC) [Bacillus amyloliquefaciens strain HX0037]
ATGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCCTGCAAAGAGGAAGGTGCAGAAACTGCCGTGCGAAGCTGTCAGTGATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAACCGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588