Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HX0037_RS13960 Genome accession   NZ_CP139782
Coordinates   2867438..2868082 (+) Length   214 a.a.
NCBI ID   WP_330537779.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2862438..2873082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS13935 - 2862881..2863222 (-) 342 WP_014305721.1 hypothetical protein -
  HX0037_RS13940 degQ 2863687..2863827 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HX0037_RS13945 - 2863979..2864890 (+) 912 WP_031378407.1 polyprenyl synthetase family protein -
  HX0037_RS13950 comX 2864890..2865054 (+) 165 WP_007613432.1 competence pheromone ComX -
  HX0037_RS13955 comP 2865066..2867357 (+) 2292 WP_094247540.1 histidine kinase Regulator
  HX0037_RS13960 comA 2867438..2868082 (+) 645 WP_330537779.1 response regulator transcription factor Regulator
  HX0037_RS13965 - 2868104..2868487 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  HX0037_RS13970 mnhG 2868527..2868901 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  HX0037_RS13975 - 2868885..2869169 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  HX0037_RS13980 - 2869169..2869645 (-) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  HX0037_RS13985 - 2869651..2871132 (-) 1482 WP_094247541.1 Na+/H+ antiporter subunit D -
  HX0037_RS13990 - 2871125..2871466 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  HX0037_RS13995 - 2871466..2871897 (-) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24297.72 Da        Isoelectric Point: 4.8698

>NTDB_id=910988 HX0037_RS13960 WP_330537779.1 2867438..2868082(+) (comA) [Bacillus amyloliquefaciens strain HX0037]
MKKILVIDDYPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=910988 HX0037_RS13960 WP_330537779.1 2867438..2868082(+) (comA) [Bacillus amyloliquefaciens strain HX0037]
ATGAAAAAGATACTAGTGATTGATGATTATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCACGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86