Detailed information NTG0910976

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HX0037_RS11020
• Genome accession: NZ_CP139782
• Coordinates: 2293373..2294518 (-)
• Length: 381 a.a.
• NCBI ID: WP_094247421.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HX0037
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2288373..2299518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HX0037_RS10995	-	2288728..2289783 (+)	1056	WP_071543387.1	SagB/ThcOx family dehydrogenase	-
HX0037_RS11000	-	2289780..2291120 (+)	1341	WP_094247420.1	MATE family efflux transporter	-
HX0037_RS11005	-	2291121..2292548 (+)	1428	WP_071543386.1	DUF885 family protein	-
HX0037_RS11010	speB	2292710..2293147 (+)	438	Protein_2125	agmatinase	-
HX0037_RS11015	-	2293270..2293389 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
HX0037_RS11020	rapF	2293373..2294518 (-)	1146	WP_094247421.1	Rap family tetratricopeptide repeat protein	Regulator
HX0037_RS11025	-	2294810..2295238 (+)	429	WP_003151069.1	DUF1934 domain-containing protein	-
HX0037_RS11030	argS	2295235..2296905 (+)	1671	WP_094247422.1	arginine--tRNA ligase	-
HX0037_RS11035	narK	2297040..2298230 (+)	1191	WP_025853600.1	nitrate transporter NarK	-
HX0037_RS11040	-	2298328..2299044 (+)	717	WP_025853599.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=910976 HX0037_RS11020 WP_094247421.1 2293373..2294518(-) (rapF) [Bacillus amyloliquefaciens strain HX0037]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=910976 HX0037_RS11020 WP_094247421.1 2293373..2294518(-) (rapF) [Bacillus amyloliquefaciens strain HX0037]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.816	100	0.698
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535