Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HX0037_RS09040 Genome accession   NZ_CP139782
Coordinates   1901155..1901445 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896155..1906445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS09025 - 1896373..1897698 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  HX0037_RS09030 - 1897833..1898600 (-) 768 WP_021494159.1 TatD family hydrolase -
  HX0037_RS09035 metG 1898681..1900672 (-) 1992 WP_025650337.1 methionine--tRNA ligase -
  HX0037_RS09040 abrB 1901155..1901445 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  HX0037_RS09045 rsmI 1901495..1902376 (-) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HX0037_RS09050 - 1902351..1902650 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  HX0037_RS09055 - 1902637..1903380 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HX0037_RS09060 yabA 1903441..1903800 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  HX0037_RS09065 ricT 1903815..1904642 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HX0037_RS09070 holB 1904645..1905634 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  HX0037_RS09075 - 1905646..1906086 (-) 441 WP_004264730.1 YaaR family protein -
  HX0037_RS09080 darA 1906099..1906428 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=910970 HX0037_RS09040 WP_169510469.1 1901155..1901445(+) (abrB) [Bacillus amyloliquefaciens strain HX0037]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=910970 HX0037_RS09040 WP_169510469.1 1901155..1901445(+) (abrB) [Bacillus amyloliquefaciens strain HX0037]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979