Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HX0037_RS07505 Genome accession   NZ_CP139782
Coordinates   1618239..1618676 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1613239..1623676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS07490 - 1616095..1616457 (-) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -
  HX0037_RS07495 hxlA 1616689..1617324 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  HX0037_RS07500 hxlB 1617321..1617878 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  HX0037_RS07505 nucA/comI 1618239..1618676 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HX0037_RS07510 nin/comJ 1618698..1619096 (+) 399 WP_094247249.1 competence protein ComJ Regulator
  HX0037_RS07515 - 1619115..1619344 (-) 230 Protein_1469 family 1 glycosylhydrolase -
  HX0037_RS19300 - 1619269..1619622 (-) 354 WP_082181748.1 family 1 glycosylhydrolase -
  HX0037_RS07520 - 1619564..1619839 (-) 276 WP_369719109.1 YckD family protein -
  HX0037_RS07525 - 1619957..1620391 (-) 435 WP_021494203.1 RDD family protein -
  HX0037_RS07530 - 1620406..1621542 (-) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  HX0037_RS07535 - 1621607..1622809 (-) 1203 WP_043866820.1 GTP-binding protein -
  HX0037_RS07540 - 1622923..1623087 (+) 165 WP_374107008.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=910965 HX0037_RS07505 WP_003156588.1 1618239..1618676(+) (nucA/comI) [Bacillus amyloliquefaciens strain HX0037]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=910965 HX0037_RS07505 WP_003156588.1 1618239..1618676(+) (nucA/comI) [Bacillus amyloliquefaciens strain HX0037]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641