Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   HX0037_RS05125 Genome accession   NZ_CP139782
Coordinates   1130448..1131239 (-) Length   263 a.a.
NCBI ID   WP_094247138.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1125448..1136239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS05085 - 1125715..1126050 (-) 336 WP_094247136.1 SdpI family protein -
  HX0037_RS05090 - 1126136..1126663 (-) 528 WP_025854031.1 SH3 domain-containing protein -
  HX0037_RS05095 - 1126795..1127064 (-) 270 WP_003155492.1 YfhJ family protein -
  HX0037_RS05100 - 1127188..1127340 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  HX0037_RS05105 - 1127487..1128398 (+) 912 WP_003155497.1 trypsin-like serine peptidase -
  HX0037_RS05110 - 1128361..1128750 (+) 390 WP_094247137.1 DUF2606 family protein -
  HX0037_RS05115 - 1128790..1129983 (-) 1194 WP_025650229.1 MFS transporter -
  HX0037_RS05120 - 1130130..1130441 (-) 312 WP_025650230.1 YfhH family protein -
  HX0037_RS05125 recX 1130448..1131239 (-) 792 WP_094247138.1 recombination regulator RecX Regulator
  HX0037_RS05130 - 1131331..1132230 (+) 900 WP_094247139.1 TIGR01777 family oxidoreductase -
  HX0037_RS05135 - 1132288..1132398 (+) 111 WP_003155504.1 YfhE family protein -
  HX0037_RS05140 - 1132469..1132660 (+) 192 WP_003155508.1 YfhD family protein -
  HX0037_RS05145 - 1132699..1133283 (-) 585 WP_094247140.1 nitroreductase -
  HX0037_RS05150 - 1133360..1134244 (-) 885 WP_094247141.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30963.16 Da        Isoelectric Point: 6.0196

>NTDB_id=910960 HX0037_RS05125 WP_094247138.1 1130448..1131239(-) (recX) [Bacillus amyloliquefaciens strain HX0037]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGIELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=910960 HX0037_RS05125 WP_094247138.1 1130448..1131239(-) (recX) [Bacillus amyloliquefaciens strain HX0037]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTACTTGTGCGTTTTGACCTGAAAAAAGGGATAGAACTGGACGAGCTTGACATTCTTGAGATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTTATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGTCCTGACGTCCTATTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787