Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   HX0037_RS03700 Genome accession   NZ_CP139782
Coordinates   868696..868887 (-) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 863696..873887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS03675 - 864053..865039 (-) 987 WP_017417448.1 ABC transporter ATP-binding protein -
  HX0037_RS03680 - 865213..865998 (-) 786 WP_017417447.1 DUF2268 domain-containing protein -
  HX0037_RS03685 fabF 866082..867320 (-) 1239 WP_025649581.1 beta-ketoacyl-ACP synthase II -
  HX0037_RS03690 - 867343..868281 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  HX0037_RS03695 - 868449..868667 (+) 219 WP_007409123.1 hypothetical protein -
  HX0037_RS03700 comZ 868696..868887 (-) 192 WP_003155061.1 ComZ family protein Regulator
  HX0037_RS03705 med 868900..869853 (-) 954 WP_014417407.1 BMP family ABC transporter substrate-binding protein Regulator
  HX0037_RS03710 - 869944..870510 (-) 567 WP_025649580.1 hypothetical protein -
  HX0037_RS03715 - 870593..871327 (-) 735 WP_014417405.1 hypothetical protein -
  HX0037_RS03720 - 871588..871773 (+) 186 WP_007409129.1 YjzD family protein -
  HX0037_RS03725 - 871810..871989 (-) 180 WP_003155070.1 YjzC family protein -
  HX0037_RS03730 argF 872065..873036 (-) 972 WP_017417442.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=910951 HX0037_RS03700 WP_003155061.1 868696..868887(-) (comZ) [Bacillus amyloliquefaciens strain HX0037]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=910951 HX0037_RS03700 WP_003155061.1 868696..868887(-) (comZ) [Bacillus amyloliquefaciens strain HX0037]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794