Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   HX0037_RS02275 Genome accession   NZ_CP139782
Coordinates   603678..604142 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 598678..609142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS02250 - 599188..599736 (-) 549 WP_094246985.1 hypothetical protein -
  HX0037_RS02255 fadH 599847..600611 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  HX0037_RS02260 - 600755..601618 (+) 864 WP_063174788.1 metallophosphoesterase -
  HX0037_RS02265 - 601693..602187 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  HX0037_RS02270 - 602263..603555 (+) 1293 WP_024085236.1 MFS transporter -
  HX0037_RS02275 kre 603678..604142 (+) 465 WP_003154622.1 YkyB family protein Regulator
  HX0037_RS02280 cheV 604185..605096 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  HX0037_RS02285 - 605285..605446 (+) 162 WP_007409608.1 hypothetical protein -
  HX0037_RS02290 - 605647..606866 (+) 1220 Protein_457 aminotransferase A -
  HX0037_RS02295 - 606842..608662 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=910944 HX0037_RS02275 WP_003154622.1 603678..604142(+) (kre) [Bacillus amyloliquefaciens strain HX0037]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=910944 HX0037_RS02275 WP_003154622.1 603678..604142(+) (kre) [Bacillus amyloliquefaciens strain HX0037]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929