Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   HX0037_RS02175 Genome accession   NZ_CP139782
Coordinates   587681..588277 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 582681..593277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS02150 mobB 583057..583578 (-) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  HX0037_RS02155 glp 583539..584831 (-) 1293 WP_094246980.1 gephyrin-like molybdotransferase Glp -
  HX0037_RS02160 - 584849..585868 (-) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  HX0037_RS02165 - 585920..586522 (-) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  HX0037_RS02170 - 586668..587660 (+) 993 WP_014304925.1 hypothetical protein -
  HX0037_RS02175 rok 587681..588277 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  HX0037_RS02180 - 588728..589186 (-) 459 WP_094246981.1 redoxin domain-containing protein -
  HX0037_RS02185 - 589473..590279 (+) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  HX0037_RS02190 - 590313..590558 (-) 246 WP_003154596.1 YkuS family protein -
  HX0037_RS02195 - 590619..591743 (-) 1125 WP_094246982.1 N-acetyldiaminopimelate deacetylase -
  HX0037_RS02200 dapD 591814..592524 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  HX0037_RS02205 - 592606..593061 (-) 456 WP_094246983.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=910943 HX0037_RS02175 WP_003154591.1 587681..588277(-) (rok) [Bacillus amyloliquefaciens strain HX0037]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=910943 HX0037_RS02175 WP_003154591.1 587681..588277(-) (rok) [Bacillus amyloliquefaciens strain HX0037]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843