Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HX0037_RS00645 Genome accession   NZ_CP139782
Coordinates   174322..174756 (-) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 169322..179756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS00610 - 169334..169687 (+) 354 WP_003154073.1 DMT family transporter -
  HX0037_RS00615 - 169701..170153 (-) 453 WP_070081858.1 OsmC family protein -
  HX0037_RS00620 - 170214..170921 (-) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  HX0037_RS00625 - 171177..171410 (-) 234 WP_041481863.1 hypothetical protein -
  HX0037_RS00630 - 171589..172917 (+) 1329 WP_043867149.1 S8 family peptidase -
  HX0037_RS00635 - 173110..173472 (+) 363 WP_007410383.1 hypothetical protein -
  HX0037_RS00640 - 173506..174261 (-) 756 WP_094246918.1 YoaK family protein -
  HX0037_RS00645 nucA/comI 174322..174756 (-) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HX0037_RS00650 - 175045..176256 (+) 1212 WP_094247884.1 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=910937 HX0037_RS00645 WP_007611576.1 174322..174756(-) (nucA/comI) [Bacillus amyloliquefaciens strain HX0037]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=910937 HX0037_RS00645 WP_007611576.1 174322..174756(-) (nucA/comI) [Bacillus amyloliquefaciens strain HX0037]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCAGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486