Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PsasTeo6_RS24505 Genome accession   NZ_CP139776
Coordinates   5354790..5355191 (-) Length   133 a.a.
NCBI ID   WP_322265022.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain Teo6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5349790..5360191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PsasTeo6_RS24490 (PsasTeo6_39248) - 5351760..5353814 (-) 2055 WP_013974525.1 methyl-accepting chemotaxis protein -
  PsasTeo6_RS24495 (PsasTeo6_39256) - 5353826..5354380 (-) 555 WP_003257767.1 chemotaxis protein CheW -
  PsasTeo6_RS24500 (PsasTeo6_39264) pilH 5354377..5354742 (-) 366 WP_232880781.1 twitching motility response regulator PilH -
  PsasTeo6_RS24505 (PsasTeo6_39272) pilG 5354790..5355191 (-) 402 WP_322265022.1 response regulator Regulator
  PsasTeo6_RS24510 (PsasTeo6_39280) gshB 5355404..5356357 (+) 954 WP_322265023.1 glutathione synthase -
  PsasTeo6_RS24515 (PsasTeo6_39288) - 5356449..5357354 (+) 906 WP_013974528.1 energy transducer TonB -
  PsasTeo6_RS24520 (PsasTeo6_39296) - 5357526..5358095 (+) 570 WP_015272081.1 YqgE/AlgH family protein -
  PsasTeo6_RS24525 (PsasTeo6_39304) ruvX 5358095..5358532 (+) 438 WP_013974530.1 Holliday junction resolvase RuvX -
  PsasTeo6_RS24530 (PsasTeo6_39312) pyrR 5358582..5359100 (+) 519 WP_015272082.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PsasTeo6_RS24535 (PsasTeo6_39320) - 5359112..5360116 (+) 1005 WP_003257774.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14592.86 Da        Isoelectric Point: 6.4772

>NTDB_id=910915 PsasTeo6_RS24505 WP_322265022.1 5354790..5355191(-) (pilG) [Pseudomonas asiatica strain Teo6]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAAQQHAL

Nucleotide


Download         Length: 402 bp        

>NTDB_id=910915 PsasTeo6_RS24505 WP_322265022.1 5354790..5355191(-) (pilG) [Pseudomonas asiatica strain Teo6]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGACTCGCGCACGATCCGCCGCACCGCACAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATCTTCG
TCGATGTGTTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCGGTGATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTCATTCTGCTTTCGTCACGTGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCCGACCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCACGTGCCCGGTTTTGCCGCAGCCCAACAACACGCACTCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632