Detailed information NTG0910892

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABU968_RS03340
• Genome accession: NZ_CP159147
• Coordinates: 691260..692252 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 10035004-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 686260..697252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU968_RS03310 (ABU968_03310)	ispD	686321..687031 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABU968_RS03315 (ABU968_03315)	ispF	687031..687510 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABU968_RS03320 (ABU968_03320)	truD	687507..688556 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
ABU968_RS03325 (ABU968_03325)	surE	688537..689298 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABU968_RS03330 (ABU968_03330)	pcm	689292..689918 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ABU968_RS03335 (ABU968_03335)	nlpD	690103..691197 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABU968_RS03340 (ABU968_03340)	rpoS	691260..692252 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABU968_RS03345 (ABU968_03345)	-	692430..692981 (-)	552	WP_001179442.1	flavodoxin family protein	-
ABU968_RS03350 (ABU968_03350)	-	693206..694249 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
ABU968_RS03355 (ABU968_03355)	ygbN	694392..695756 (-)	1365	WP_000104443.1	GntP family transporter	-
ABU968_RS03360 (ABU968_03360)	ygbM	695845..696621 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=910892 ABU968_RS03340 WP_000081550.1 691260..692252(+) (rpoS) [Escherichia coli strain 10035004-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=910892 ABU968_RS03340 WP_000081550.1 691260..692252(+) (rpoS) [Escherichia coli strain 10035004-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715