Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AABK39_RS00655 Genome accession   NZ_AP025314
Coordinates   182378..183769 (+) Length   463 a.a.
NCBI ID   WP_338393013.1    Uniprot ID   A0AAU9CQQ6
Organism   Fulvitalea axinellae strain DSM 100852     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177378..188769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK39_RS00635 (FUAX_01300) ribH 178538..179014 (-) 477 WP_338393009.1 6,7-dimethyl-8-ribityllumazine synthase -
  AABK39_RS00640 (FUAX_01310) - 179218..179919 (-) 702 WP_338393010.1 tetratricopeptide repeat protein -
  AABK39_RS00645 (FUAX_01320) pdhA 180094..181122 (-) 1029 WP_338393011.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  AABK39_RS00650 (FUAX_01330) recF 181243..182328 (+) 1086 WP_338393012.1 DNA replication and repair protein RecF -
  AABK39_RS00655 (FUAX_01340) radA 182378..183769 (+) 1392 WP_338393013.1 DNA repair protein RadA Machinery gene
  AABK39_RS00660 (FUAX_01350) - 183850..184614 (-) 765 WP_338393014.1 methyltransferase domain-containing protein -
  AABK39_RS00665 (FUAX_01360) - 184747..185277 (-) 531 WP_338393015.1 RNA methyltransferase -
  AABK39_RS00670 (FUAX_01370) gpmI 185995..187515 (-) 1521 WP_338393016.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AABK39_RS00675 (FUAX_01380) - 187889..188311 (+) 423 WP_338393017.1 DUF4783 domain-containing protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51287.93 Da        Isoelectric Point: 7.5847

>NTDB_id=91085 AABK39_RS00655 WP_338393013.1 182378..183769(+) (radA) [Fulvitalea axinellae strain DSM 100852]
MAKIKTSYFCNNCGSQSPKWLGKCPSCGQWNTYVEEVVTKEEKGKGSVAWRTEADRGTSGREKSRPQRITDISAKEQPRF
DSFDEELNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALKLKDKKVLYVSGEESEQQIRMRAERMVFKSDDCYILTEVS
TQNIFKQVELLKPDVLVVDSIQTLHSSYMESAAGSIGQVKQCTAELMKFAKETDTPTFLIGHINKDGNIAGPKVLEHMVD
TVLQFEGDRHMAYRILRTIKNRFGSTSELGIYEMRHDGLREVSNPSEILITQKESELSGVTIGATLEGRRPLLIEIQSLV
STATYGTPQRSTTGFDVKRLNMLLAVLEKRGGFKLGAQDVFLNIAGGLKVEDPALDLAVCVSLISSYIEKFVSEKACFAA
EVGLGGEIRAVNHLESRIAEAAKLGFREIYVSRYAIKGIDLKKYDIEVRSFGKLSEVFRDLFA

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=91085 AABK39_RS00655 WP_338393013.1 182378..183769(+) (radA) [Fulvitalea axinellae strain DSM 100852]
ATGGCCAAAATCAAGACTTCATATTTTTGCAATAATTGTGGTAGCCAGTCGCCGAAATGGCTGGGCAAGTGCCCCTCTTG
CGGACAGTGGAACACTTACGTGGAAGAGGTGGTGACGAAAGAGGAAAAAGGCAAAGGCTCGGTGGCTTGGCGTACGGAGG
CCGACCGTGGTACGAGTGGGCGGGAGAAAAGCCGGCCACAGCGCATCACTGACATTAGCGCTAAGGAACAACCCCGCTTC
GACAGTTTTGACGAAGAACTTAACCGCGTTTTGGGTGGCGGTATCGTGCCGGGCTCGCTTGTGCTGATCGGTGGCGAGCC
GGGTATTGGAAAGTCTACGCTGATGTTGCAGATTGCGCTTAAGCTCAAGGACAAAAAAGTGCTGTACGTATCCGGTGAGG
AAAGCGAACAGCAGATTCGTATGCGTGCCGAGCGGATGGTCTTTAAGTCTGACGACTGTTATATCTTGACGGAGGTATCG
ACCCAAAATATTTTCAAGCAGGTTGAGTTGTTGAAGCCCGATGTTTTGGTTGTGGATTCGATCCAGACTTTGCATTCCAG
CTATATGGAATCGGCGGCGGGAAGTATCGGGCAGGTAAAACAATGTACGGCCGAGTTGATGAAATTCGCCAAGGAGACGG
ACACCCCTACTTTCCTGATCGGCCATATTAATAAGGACGGAAACATCGCTGGGCCGAAAGTTTTGGAACATATGGTGGAC
ACTGTCCTTCAGTTTGAGGGTGACCGGCATATGGCTTATCGCATCTTGCGGACGATCAAAAACCGTTTCGGTTCCACTTC
CGAACTCGGTATTTACGAGATGCGGCATGATGGGTTGCGCGAAGTTTCGAACCCTTCGGAAATCCTGATTACCCAAAAGG
AAAGCGAGCTGAGTGGCGTAACGATTGGCGCTACGCTGGAAGGTCGGCGTCCGTTATTGATTGAGATCCAGTCGTTGGTC
AGTACGGCCACTTACGGCACGCCACAGCGCAGTACGACGGGCTTTGACGTGAAAAGGCTGAATATGCTTTTGGCCGTTTT
GGAAAAACGTGGAGGCTTTAAACTCGGCGCTCAGGACGTATTTTTGAATATTGCCGGCGGTTTGAAAGTCGAGGATCCGG
CCTTGGACCTTGCGGTGTGCGTATCGCTTATTTCTTCGTATATCGAAAAGTTTGTGTCGGAGAAAGCTTGTTTTGCCGCT
GAGGTCGGCTTGGGAGGCGAGATTAGGGCCGTGAACCATCTGGAAAGCCGGATAGCCGAAGCCGCCAAGCTTGGTTTCCG
TGAGATTTATGTGTCGCGTTACGCCATTAAGGGAATCGACCTGAAAAAATACGATATAGAAGTGCGCTCGTTCGGAAAAC
TTAGCGAAGTTTTTCGGGATTTGTTCGCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.276

100

0.484
  radA Streptococcus pneumoniae Rx1

48.276

100

0.484
  radA Streptococcus pneumoniae D39

48.276

100

0.484
  radA Streptococcus pneumoniae TIGR4

48.276

100

0.484
  radA Streptococcus mitis NCTC 12261

48.06

100

0.482
  radA Streptococcus mitis SK321

47.845

100

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

47.722

99.568

0.475

Multiple sequence alignment