Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   UM396_RS12110 Genome accession   NZ_CP139723
Coordinates   2367694..2369415 (-) Length   573 a.a.
NCBI ID   WP_063165325.1    Uniprot ID   Q6E1R7
Organism   Geobacillus subterraneus strain OXR-76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362694..2374415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS12080 (UM396_12080) - 2363013..2363261 (+) 249 WP_063165329.1 DUF2627 domain-containing protein -
  UM396_RS12085 (UM396_12085) - 2363273..2364001 (-) 729 WP_063165328.1 glycerophosphodiester phosphodiesterase -
  UM396_RS12090 (UM396_12090) - 2364110..2364262 (+) 153 WP_081432649.1 YycC family protein -
  UM396_RS12095 (UM396_12095) - 2364492..2364974 (+) 483 WP_244956370.1 hypothetical protein -
  UM396_RS12100 (UM396_12100) spo0A 2365106..2365924 (-) 819 WP_322310272.1 sporulation transcription factor Spo0A -
  UM396_RS12105 (UM396_12105) spoIVB 2366176..2367471 (-) 1296 WP_322310273.1 SpoIVB peptidase -
  UM396_RS12110 (UM396_12110) recN 2367694..2369415 (-) 1722 WP_063165325.1 DNA repair protein RecN Machinery gene
  UM396_RS12115 (UM396_12115) ahrC 2369558..2370007 (-) 450 WP_020960521.1 transcriptional regulator AhrC/ArgR -
  UM396_RS12120 (UM396_12120) - 2370091..2370939 (-) 849 WP_168368769.1 TlyA family RNA methyltransferase -
  UM396_RS12125 (UM396_12125) dxs 2370945..2372837 (-) 1893 WP_063165323.1 1-deoxy-D-xylulose-5-phosphate synthase -
  UM396_RS12130 (UM396_12130) - 2373104..2373997 (-) 894 WP_063165322.1 polyprenyl synthetase family protein -
  UM396_RS12135 (UM396_12135) - 2374001..2374231 (-) 231 WP_063165321.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63839.18 Da        Isoelectric Point: 4.9290

>NTDB_id=910724 UM396_RS12110 WP_063165325.1 2367694..2369415(-) (recN) [Geobacillus subterraneus strain OXR-76]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDERHPCCQK
CAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTTAVLREIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEAAEAL
ARYRAVYEQHEALAKKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYEAIQKSYGALAG
EGRGLDSIREAMSHLDDVAAMDAALKEAHETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTGDLLIEAKRVTNVRQTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLLIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=910724 UM396_RS12110 WP_063165325.1 2367694..2369415(-) (recN) [Geobacillus subterraneus strain OXR-76]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATTATTGAATCGTTATCGTTGTCCTTTGACAAAGGGCTGACAGTGTT
AACCGGCGAAACAGGGGCGGGCAAATCGATCATCATCGACGCGATTCATCTGTTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGACGATGAGCGTCATCCATGTTGCCAAAAA
TGCGCCGAGGTCGGCATCGATGCGAGCGAAGGGATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACGACCGCCGTACTGCGCGAAATTGGAGCGACGCTTGTCGATATTCACGGCCAGCATG
AACATCAAGAGCTGATGGATCCGTCCCGCCACTTGCCGCTTCTTGATGAATTCGGCGGCGCGGAGGCGGCTGAAGCGCTC
GCACGCTACCGCGCTGTGTATGAACAGCATGAAGCGCTGGCGAAAAAGTTGAAAAAGCTGAGTGAAAATGAGCAGCAAAT
GGCGCATCGGCTCGATCTATTGACATTTCAGCTGCGCGAAATCGAACAGGCGGCACTCGAGCCGGGAGAAGACGAGCGGC
TGATGGAAGAAAAAGTACGCATTGTCAATTTTCAAAAGATATATGAAGCCATCCAGAAAAGCTATGGGGCGCTTGCCGGC
GAAGGGCGCGGCCTTGACTCGATTCGAGAGGCGATGAGCCACCTCGATGATGTCGCTGCGATGGATGCTGCGCTGAAGGA
AGCGCACGAAACAGTCGCCAACAGCTACTACTTGCTTGAAGAAGTGATGTACAAGCTGCGCGACCAGCTCGAGGAACTTG
AATACGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCCGAAATTCAGCAGTTAAAACGGAAATACGGTGCAACG
ATCGCTGATATTTTGCAATATGCTGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGCGAGACGCATGTGCATGA
ACTTGAGCGGCAGCTTGCGGCGGTGACGGGCGATTTGCTGATTGAGGCGAAACGCGTAACCAACGTCCGGCAGACGTACG
CTCGGGAGCTGATCGAGCGCATTCACCAAGAGTTGAAAGATTTGTACATGGAGAAAACGCAGTTCGACATCATTTTTGCG
AAGCGTGAAGGACCGCTCGATGCCCCGTTAGTCGACGGCGTGCCAGTCAAGTTTCACGAAGATGGCATCGACGTCGTCGA
GTTTTACATTTCGACGAACGTCGGTGAGCCGTTGAAGCCGCTCGCGAAAGTGGCTTCGGGCGGTGAATTGTCACGGATCA
TGCTGGCGTTGAAAACGATTTTTTCCAAACACCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACGGGCGTCAGC
GGCCGCGTCGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCATCTGCC
GCAAGTGGCCGCTATGGCGGACACCCATTTATTGATCGCCAAAGAAACGGACGGAACGCGGACGAAGACAGTGGTGAAAA
AGTTGGATGAGGAAGAGAAGGTGAAAGAAATCGGACGGATGATTTCCGGCGTCGAAATGACGGAGCTGACAAAACAGCAC
GCCAAAGAGCTGTTGGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6E1R7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.369

100

0.625