Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   UM396_RS04320 Genome accession   NZ_CP139723
Coordinates   823156..824979 (+) Length   607 a.a.
NCBI ID   WP_063165578.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 818156..829979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS04300 (UM396_04300) - 818495..819163 (-) 669 WP_063165575.1 TerC family protein -
  UM396_RS04305 (UM396_04305) mecA 819380..820060 (+) 681 WP_063165576.1 adaptor protein MecA -
  UM396_RS04310 (UM396_04310) cls 820156..821664 (+) 1509 WP_063165577.1 cardiolipin synthase -
  UM396_RS04315 (UM396_04315) - 821834..823123 (+) 1290 WP_168368229.1 competence protein CoiA -
  UM396_RS04320 (UM396_04320) pepF 823156..824979 (+) 1824 WP_063165578.1 oligoendopeptidase F Regulator
  UM396_RS04325 (UM396_04325) - 824993..825190 (-) 198 WP_063165579.1 hypothetical protein -
  UM396_RS04330 (UM396_04330) spxH 825464..826357 (-) 894 WP_168368230.1 ClpXP adapter protein SpxH -
  UM396_RS04335 (UM396_04335) - 826350..826763 (-) 414 WP_063165581.1 globin -
  UM396_RS04340 (UM396_04340) - 826865..827470 (-) 606 WP_063165582.1 lytic transglycosylase domain-containing protein -
  UM396_RS04345 (UM396_04345) - 827467..828057 (-) 591 WP_063165583.1 CYTH domain-containing protein -
  UM396_RS04350 (UM396_04350) - 828192..828569 (+) 378 WP_063165584.1 hypothetical protein -
  UM396_RS04355 (UM396_04355) - 828695..829333 (+) 639 WP_063165585.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70250.17 Da        Isoelectric Point: 5.0867

>NTDB_id=910714 UM396_RS04320 WP_063165578.1 823156..824979(+) (pepF) [Geobacillus subterraneus strain OXR-76]
MVVEENKATKSLPSRSEIPVEETWRLEDIFPTDDAWEQEFQQVKAMIPKISEYKGRLGESPEVMYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNAFYQGINDRAKSLYSEASSAMAFIVPEILDIDEAVLRSFLEQYEPLRLYQHALDEITRQRPHVLS
AEEEALLAQAAEVMQATSSTFSALNNADLTFPTIRDENGDEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
NTLAGTVKKDNFFARVRRYSSAREAALDANKIPESVYDNLIATIHEHLPLLHRYVRLRKNVLGLDELHMYDLYTPLVQDV
KMEVTYGEAKQYMLDGLAPLGEEYVAIIKEGLENRWVDVRENRGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDHLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQEGEALTAKTLTSLYYDLNKKYFGEDMVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLGK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=910714 UM396_RS04320 WP_063165578.1 823156..824979(+) (pepF) [Geobacillus subterraneus strain OXR-76]
ATAGTGGTGGAAGAGAACAAGGCAACGAAATCGCTTCCGTCCCGGAGCGAAATCCCTGTCGAGGAAACGTGGCGGCTCGA
GGACATTTTCCCGACCGATGACGCTTGGGAACAGGAGTTTCAGCAAGTGAAGGCGATGATTCCGAAGATCAGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGATGTATGAAGCGCTGCAATACCAAGATGAAGTGTCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGACACGACGAACGCGTTTTACCAAGGGATCAACGACCGGGCGAAAAG
CTTGTACAGCGAAGCGTCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGACATTGATGAAGCGGTGTTGCGTTCGT
TTTTGGAGCAATACGAACCGCTCAGGCTGTATCAACACGCGCTAGATGAAATTACGCGCCAGCGCCCGCACGTCTTGTCA
GCTGAAGAAGAAGCGCTGCTGGCACAGGCGGCTGAGGTCATGCAGGCGACATCATCGACATTCAGTGCGTTAAACAACGC
TGACTTAACGTTCCCGACGATCCGCGACGAAAATGGGGATGAGGTGGAAGTGACGCACGGCCGGTTTATCCGCTTTTTGG
AAAGCACCGACCGCCGCGTCCGCCGCGATGCGTTTCATGCGGTATACCATACGTACGAGAAGTTTCAGAATACGTTTGCC
AACACGCTTGCGGGCACGGTGAAAAAAGACAACTTTTTCGCCCGTGTCCGCCGCTACAGCTCAGCGCGGGAAGCGGCATT
GGATGCGAACAAGATTCCAGAGAGCGTCTATGATAATTTGATTGCCACGATTCACGAGCACTTGCCGTTGTTGCACCGGT
ATGTGCGGCTGCGTAAAAACGTGCTTGGGCTCGACGAGCTGCATATGTACGACTTATACACCCCGCTCGTGCAAGATGTA
AAAATGGAAGTGACCTACGGCGAAGCGAAGCAATATATGCTTGACGGGCTGGCGCCGCTTGGCGAGGAATATGTAGCAAT
CATCAAGGAAGGGCTTGAGAACCGTTGGGTCGATGTGCGCGAAAATAGAGGAAAGCGAAGCGGAGCCTATTCATCAGGGG
CGTACGGCACGCATCCGTACATTTTGCTGAACTGGCAAGACAACGTAAACAACTTATTTACGCTCGTGCATGAGTTCGGT
CACTCGGTCCATAGCTACTATACGCGCAAAACACAGCCGTATCCGTACGCCCATTATTCGATTTTTGTTGCTGAAGTGGC
GTCGACATGCAATGAGGCGCTGTTGAACGATCATTTGTTGAAAACGATCGATGATGAGAAAAAACGGCTATACTTGTTGA
ACCATTATCTTGAAGGGTTCCGCGGCACCGTCTTCCGGCAGACGATGTTTGCCGAGTTCGAGCATTTGATCCATCTGAAA
GCGCAGGAGGGGGAAGCGCTGACGGCAAAGACGCTCACGTCGCTCTATTATGACTTGAACAAAAAGTATTTCGGCGAGGA
TATGGTGGTTGATGAAGAAATTGGCCTTGAATGGGCGCGCATCCCGCATTTTTATTACAACTATTACGTGTATCAGTATG
CGACCGGCTTCAGTGCAGCGACGGCGCTCAGCAAGCAGATTTTAGAGGAAGGCGAGCCGGCGGTGAAACGGTATATCGAC
TTTTTAAAAGCCGGCAGCTCCGATTATCCGATCGAGGTGTTGAAAAAAGCGGGCGTCGATATGACAAGCGCCGAACCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAATTGGAAGAAATGGAACGCTTGCTTGGAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.505

97.858

0.494