Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ABU966_RS19235 Genome accession   NZ_CP159118
Coordinates   3939781..3941028 (+) Length   415 a.a.
NCBI ID   WP_261628984.1    Uniprot ID   -
Organism   Escherichia coli strain 10034292-3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934781..3946028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU966_RS19220 (ABU966_19220) - 3935296..3936972 (+) 1677 WP_001546114.1 polysaccharide biosynthesis/export family protein -
  ABU966_RS19225 (ABU966_19225) kdsB 3936982..3937722 (+) 741 WP_261628983.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABU966_RS19230 (ABU966_19230) - 3937719..3939746 (+) 2028 WP_001546115.1 capsular polysaccharide biosynthesis protein -
  ABU966_RS19235 (ABU966_19235) kpsS 3939781..3941028 (+) 1248 WP_261628984.1 capsular biosynthesis protein Regulator
  ABU966_RS19240 (ABU966_19240) - 3941520..3942149 (-) 630 WP_021521026.1 CatB-related O-acetyltransferase -
  ABU966_RS19245 (ABU966_19245) - 3942146..3944428 (-) 2283 WP_261628985.1 hypothetical protein -
  ABU966_RS19250 (ABU966_19250) galE 3944520..3945539 (-) 1020 WP_021521028.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49381.07 Da        Isoelectric Point: 10.1281

>NTDB_id=910687 ABU966_RS19235 WP_261628984.1 3939781..3941028(+) (kpsS) [Escherichia coli strain 10034292-3]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGDVKKGLVWII
RTDFSYIKNNTIQSP

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=910687 ABU966_RS19235 WP_261628984.1 3939781..3941028(+) (kpsS) [Escherichia coli strain 10034292-3]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTCGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACATTATCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTTCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACACAGGTTAATGGGGTTTATTATGGGGATGTAAAGAAAGGGTTAGTGTGGATTATA
AGAACAGATTTTTCTTACATCAAAAATAATACAATACAATCACCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

94.217

0.376