Detailed information NTG0910682

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABU966_RS17530
• Genome accession: NZ_CP159118
• Coordinates: 3572901..3573893 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 10034292-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3567901..3578893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU966_RS17510 (ABU966_17510)	ygbM	3568539..3569315 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
ABU966_RS17515 (ABU966_17515)	ygbN	3569404..3570768 (+)	1365	WP_000104433.1	GntP family transporter	-
ABU966_RS17520 (ABU966_17520)	-	3570911..3571954 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ABU966_RS17525 (ABU966_17525)	-	3572179..3572730 (+)	552	WP_001179444.1	flavodoxin family protein	-
ABU966_RS17530 (ABU966_17530)	rpoS	3572901..3573893 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABU966_RS17535 (ABU966_17535)	nlpD	3573956..3575050 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ABU966_RS17540 (ABU966_17540)	pcm	3575235..3575861 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABU966_RS17545 (ABU966_17545)	surE	3575855..3576616 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABU966_RS17550 (ABU966_17550)	truD	3576597..3577646 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ABU966_RS17555 (ABU966_17555)	ispF	3577643..3578122 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABU966_RS17560 (ABU966_17560)	ispD	3578122..3578832 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=910682 ABU966_RS17530 WP_000081550.1 3572901..3573893(-) (rpoS) [Escherichia coli strain 10034292-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=910682 ABU966_RS17530 WP_000081550.1 3572901..3573893(-) (rpoS) [Escherichia coli strain 10034292-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715