Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ABNQ24_RS16520 Genome accession   NZ_CP158968
Coordinates   3440842..3443706 (+) Length   954 a.a.
NCBI ID   WP_071507130.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain EN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3435842..3448706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNQ24_RS16500 (ABNQ24_16465) - 3435925..3437517 (-) 1593 WP_161495331.1 site-specific integrase -
  ABNQ24_RS16505 (ABNQ24_16470) - 3437504..3438709 (-) 1206 WP_161495332.1 site-specific integrase -
  ABNQ24_RS16510 (ABNQ24_16475) ssb 3438872..3439408 (-) 537 WP_011000383.1 single-stranded DNA-binding protein Machinery gene
  ABNQ24_RS16515 (ABNQ24_16480) - 3439456..3440661 (-) 1206 WP_021155996.1 MFS transporter -
  ABNQ24_RS16520 (ABNQ24_16485) uvrA 3440842..3443706 (+) 2865 WP_071507130.1 excinuclease ABC subunit UvrA Machinery gene
  ABNQ24_RS16525 (ABNQ24_16490) - 3443786..3444271 (+) 486 WP_058907465.1 adenosine-specific kinase -
  ABNQ24_RS16530 (ABNQ24_16495) - 3444372..3444992 (-) 621 WP_011000379.1 LysE family translocator -
  ABNQ24_RS16535 (ABNQ24_16500) - 3445092..3445685 (-) 594 WP_019717494.1 adenine phosphoribosyltransferase -
  ABNQ24_RS16540 (ABNQ24_16505) - 3445818..3446396 (+) 579 WP_011000377.1 DJ-1/PfpI family protein -
  ABNQ24_RS16545 (ABNQ24_16510) - 3446441..3446845 (+) 405 WP_011000376.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 954 a.a.        Molecular weight: 105670.21 Da        Isoelectric Point: 6.9429

>NTDB_id=910534 ABNQ24_RS16520 WP_071507130.1 3440842..3443706(+) (uvrA) [Ralstonia pseudosolanacearum strain EN1]
MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS
PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKG
EHVDLFEAMQAQGFVRFRIRSGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADG
RALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDR
RNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSGKQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIA
VREELAKYQNNQACPECEGTRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDE
DMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSLTGEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNA
DIPVGLLTCVTGVSGSGKSTLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDLCHGKRYNRETLEVLYKGKNITEVL
EMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIE
LLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKRK

Nucleotide


Download         Length: 2865 bp        

>NTDB_id=910534 ABNQ24_RS16520 WP_071507130.1 3440842..3443706(+) (uvrA) [Ralstonia pseudosolanacearum strain EN1]
ATGGAAGCCATCAAGATTCGTGGGGCCCGGACCCACAACCTGAAGAACATCAACCTCGATCTGCCGCGCAACCAGCTGGT
GGTCATCACGGGGCTGTCGGGGTCGGGCAAGTCGTCGCTCGCGTTCGACACACTCTATGCGGAAGGGCAGCGCCGCTACG
TGGAGTCGCTGTCGGCCTATGCGCGGCAGTTCCTGCAACTGATGGAAAAGCCGGACGTCGACCTGATCGAAGGCCTGTCG
CCGGCCATCTCGATCGAACAGAAGGCCACCAGCCACAACCCGCGCTCCACCGTCGGCACCGTCACCGAGATCCACGACTA
CCTGCGCCTGCTGTACGCCCGCGCCGGCACGCCCTACTGCCCGGAGCACGGCCAGCCGCTGGAAGCGCAGAGCGTGTCGC
AGATGGTGGATGCCGTGCTGGCGCTGCCGGCCGACACCAAGCTGATGATCCTGGCGCCCGTGGTGACCAACCGCAAGGGC
GAGCACGTGGACCTGTTCGAGGCGATGCAGGCGCAGGGCTTCGTGCGCTTCCGCATCCGCTCGGGCGGCGGCACGGCGCA
CGAGGCCGAAGCCAAAGTCTACGAGGTCGACGCGCTGCCCAAGCTGAAGAAGAACGACAAGCACGCCATCGAGGTGGTGG
TCGATCGCGTCAAGGTCAACCCGGAACTCAAGCAGCGCCTGGCCGAATCCTTCGAGACCGCGCTGCGCCTGGCCGACGGC
CGCGCCCTCGCGCTGGAGATGGACACGGGCAAGGAGCACGTCTTCAGCTCCAAGTTCGCCTGCCCGATCTGCTCGTATTC
GCTGCCGGAGCTGGAGCCGCGCCTGTTCTCGTTCAACAACCCGATGGGCGCCTGCCCCCATTGCGACGGCCTGGGCCAGA
TCACCTTCTTCGACCCGAAGCGCGTGGTGGCCTTCCCCAACCTGTCGCTGGCCTCGGGCGCCATCAAGGGCTGGGACCGC
CGCAACCAGTTCTACTTCCAGATGCTGCAGAGCCTGGCGGCGTTCTACGACTTCGACACCGACACGCCGTTCGAAGAGCT
GCCCAGTGAAGTCCAGGACGTCGTGCTGCAGGGCTCGGGCAAGCAGCAGATCCCGTTCACGTACATCAACGAACGCGGCC
GCACCACGGTGCGCGAGCATGCCTTCGAGGGCATCATCCCCAACCTGGAGCGGCGCTACAAGGAAACCGACTCCATCGCC
GTGCGCGAAGAACTGGCCAAGTACCAGAACAACCAGGCCTGCCCCGAGTGCGAGGGCACGCGCCTGCGCCGCGAGGCGCG
CCACGTCAAGCTCGGCGACAGCGACCAGGCCCGCGCGATCTACGAGATCAACGGCTGGCCGCTGCGCGATGCGCTCACAT
ATTTCCTCACGCTGAACCTGCACGGCGCCAAGCGCGAGATCGCCGACAAGATCGTCCAGGAAATCACCTCGCGGCTGAAC
TTCCTGAACAACGTCGGGCTCGACTACCTCTCGCTGGAGCGCAGCGCCGACACGCTCTCCGGCGGCGAGGCGCAGCGCAT
CCGCCTGGCCTCGCAGATCGGCTCGGGCCTGACCGGCGTGATGTACGTGCTGGACGAGCCCTCCATCGGCCTGCACCAGC
GCGACAACGACCGGCTGATCGGCACCCTCAAGCACCTGCGCGACCTCGGCAACTCGGTGCTGGTGGTCGAGCACGATGAA
GACATGATCCGCGCCTCGGACCACGTGGTCGACATCGGCCCCGGCGCCGGCGTGCACGGCGGCCAGATCATCGCCGAGGG
CACGCCCAGGCAGATCGAGCGGTCACCCGGCTCGCTGACCGGCGAATACCTGTCGGGCAAGCGCCGCATCGAGGTGCCCA
AGCAGCGCACCGCGCCCGACGAAGCGCGCTGGCTGCGCATCGTCAACGCGTCGGGCAACAACCTGAAGCACGTCAACGCC
GACATCCCGGTCGGGCTGCTCACCTGCGTGACGGGCGTATCGGGCTCGGGCAAATCGACGCTGATCAACGACACGCTGTA
CAACGCGGTGGCGCGCCACCTCTACGGCTCCACCCCGGAGCCCACCGCGCACGACCGCATCGACGGCCTGGAGCACTTCG
ACAAGGTCATCAACGTCGACCAGTCGCCGATCGGCCGCACCCCGCGCTCCAACCCGGCCACCTACACCGGCCTGTTCACG
CCGATCCGCGAGCTGTATGCGGGCGTGCCGGCCGCCAAGGAGCGCGGCTACGACCCGGGCCGCTTCTCGTTCAACGTCAA
GGGCGGCCGCTGCGAGGCGTGCCAGGGCGACGGCGTGCTCAAGGTCGAGATGCACTTCCTGCCCGACGTGTACGTGCCCT
GCGACCTGTGCCACGGCAAGCGCTACAACCGCGAGACGCTGGAGGTGCTGTACAAGGGCAAGAACATCACCGAAGTGCTC
GAGATGACGGTCGAGCAGGCGCACGAGTTCTTCGCGCCGGTGCCGGTGGTGCGCCGCAAGCTGCAGACGCTGCTGGACGT
GGGCCTGGGCTACATCCGCCTGGGCCAGTCGGCGACCACGCTGTCGGGCGGCGAGGCACAGCGCGTGAAGCTGTCGCTGG
AGCTGTCCAAGCGCGACACCGGCCGCACGCTCTACATCCTCGACGAGCCGACCACCGGCCTGCACTTCCACGACATCGAG
CTGCTGCTCAAGGTGATCCATAAGCTGCGCGACCAGGGCAACACGGTCGTCATCATCGAGCACAACCTCGACGTGATCAA
AACGGCGGACTGGCTGCTCGACCTCGGCCCCGAAGGCGGCGCCGGCGGCGGGCAGATCATCGCCAAGGGCACGCCGGAGG
AGGTGGCCAAGAGCCGCGCGAGCTTTACCGGCAAGTATCTGGCGCCGTTGCTCAAGCGCAAATGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-245)

UvrA DNA-binding domain (UvrA_DNA-bind)

(298-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.811

99.266

0.564
  uvrA Streptococcus pneumoniae TIGR4

56.811

99.266

0.564
  uvrA Streptococcus pneumoniae D39

56.811

99.266

0.564