Detailed information NTG0910518

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABNQ24_RS11590
• Genome accession: NZ_CP158968
• Coordinates: 2490355..2491488 (-)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain EN1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2485355..2496488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNQ24_RS11570 (ABNQ24_11550)	ndk	2486366..2486791 (-)	426	WP_011001161.1	nucleoside-diphosphate kinase	-
ABNQ24_RS11575 (ABNQ24_11555)	-	2487160..2487861 (+)	702	WP_058906983.1	Bax inhibitor-1/YccA family protein	-
ABNQ24_RS11580 (ABNQ24_11560)	rlmD	2487945..2489297 (-)	1353	WP_020831713.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
ABNQ24_RS11585 (ABNQ24_11565)	-	2489452..2490321 (+)	870	WP_058906984.1	endonuclease/exonuclease/phosphatase family protein	-
ABNQ24_RS11590 (ABNQ24_11570)	rpoS	2490355..2491488 (-)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
ABNQ24_RS11595 (ABNQ24_11575)	-	2491497..2492324 (-)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABNQ24_RS11600 (ABNQ24_11580)	-	2492326..2493291 (-)	966	WP_071089383.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABNQ24_RS11605 (ABNQ24_11585)	surE	2493307..2494062 (-)	756	WP_058906986.1	5'/3'-nucleotidase SurE	-
ABNQ24_RS11610 (ABNQ24_11590)	-	2494254..2495228 (+)	975	WP_016722151.1	NADPH:quinone oxidoreductase family protein	-
ABNQ24_RS11615 (ABNQ24_11595)	-	2495306..2496412 (-)	1107	WP_058906987.1	alkene reductase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=910518 ABNQ24_RS11590 WP_011001157.1 2490355..2491488(-) (rpoS) [Ralstonia pseudosolanacearum strain EN1]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=910518 ABNQ24_RS11590 WP_011001157.1 2490355..2491488(-) (rpoS) [Ralstonia pseudosolanacearum strain EN1]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAGCTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACCACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374