Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABNQ24_RS05070 Genome accession   NZ_CP158968
Coordinates   1046502..1047122 (-) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain EN1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1041502..1052122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNQ24_RS05040 (ABNQ24_05030) - 1042002..1042760 (-) 759 WP_019718335.1 3-hydroxyacyl-CoA dehydrogenase -
  ABNQ24_RS05045 (ABNQ24_05035) adk 1042921..1043589 (-) 669 WP_011002448.1 adenylate kinase -
  ABNQ24_RS05050 (ABNQ24_05040) kdsB 1043909..1044715 (-) 807 WP_016725950.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABNQ24_RS05055 (ABNQ24_05045) - 1044734..1044922 (-) 189 WP_003266270.1 Trm112 family protein -
  ABNQ24_RS05060 (ABNQ24_05050) lpxK 1044983..1046032 (-) 1050 WP_021155356.1 tetraacyldisaccharide 4'-kinase -
  ABNQ24_RS05065 (ABNQ24_05055) - 1046048..1046479 (-) 432 WP_011002445.1 biopolymer transporter ExbD -
  ABNQ24_RS05070 (ABNQ24_05060) exbB 1046502..1047122 (-) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABNQ24_RS05075 (ABNQ24_05065) xseA 1048747..1050162 (+) 1416 WP_019718337.1 exodeoxyribonuclease VII large subunit -
  ABNQ24_RS05080 (ABNQ24_05070) sodB 1050308..1050886 (+) 579 WP_016724102.1 superoxide dismutase [Fe] -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=910502 ABNQ24_RS05070 WP_011002444.1 1046502..1047122(-) (exbB) [Ralstonia pseudosolanacearum strain EN1]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=910502 ABNQ24_RS05070 WP_011002444.1 1046502..1047122(-) (exbB) [Ralstonia pseudosolanacearum strain EN1]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCGGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGCCAGAACGTCGCTCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403