Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   SD437_RS18640 Genome accession   NZ_CP139565
Coordinates   3692931..3694076 (+) Length   381 a.a.
NCBI ID   WP_017418708.1    Uniprot ID   -
Organism   Bacillus velezensis strain NCCP     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3687931..3699076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS18620 fnr 3688405..3689121 (-) 717 WP_017418713.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  SD437_RS18625 narK 3689219..3690409 (-) 1191 WP_017418712.1 nitrate transporter NarK -
  SD437_RS18630 argS 3690544..3692214 (-) 1671 WP_025649385.1 arginine--tRNA ligase -
  SD437_RS18635 - 3692211..3692639 (-) 429 WP_003151069.1 DUF1934 family protein -
  SD437_RS18640 rapF 3692931..3694076 (+) 1146 WP_017418708.1 tetratricopeptide repeat protein Regulator
  SD437_RS18645 - 3694060..3694179 (+) 120 WP_017418707.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  SD437_RS18650 speB 3694302..3694739 (-) 438 Protein_3615 agmatinase -
  SD437_RS18655 - 3694901..3696325 (-) 1425 WP_260654542.1 hypothetical protein -
  SD437_RS18660 - 3696326..3697666 (-) 1341 WP_129091331.1 MATE family efflux transporter -
  SD437_RS18665 - 3697663..3698718 (-) 1056 WP_129091330.1 SagB/ThcOx family dehydrogenase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45782.29 Da        Isoelectric Point: 5.0722

>NTDB_id=910253 SD437_RS18640 WP_017418708.1 3692931..3694076(+) (rapF) [Bacillus velezensis strain NCCP]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=910253 SD437_RS18640 WP_017418708.1 3692931..3694076(+) (rapF) [Bacillus velezensis strain NCCP]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

70.341

100

0.703
  rapC Bacillus subtilis subsp. subtilis str. 168

53.421

99.738

0.533