Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ABOX98_RS10530 Genome accession   NZ_CP158570
Coordinates   2174760..2175089 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain SRPA1308     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2169760..2180089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOX98_RS10515 (ABOX98_10515) - 2170489..2171433 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  ABOX98_RS10520 (ABOX98_10520) - 2171534..2172559 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  ABOX98_RS10525 (ABOX98_10525) - 2172572..2174569 (+) 1998 WP_252174598.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ABOX98_RS10530 (ABOX98_10530) comEA/comE1 2174760..2175089 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  ABOX98_RS10540 (ABOX98_10540) - 2175306..2176502 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ABOX98_RS10545 (ABOX98_10545) uvrB 2176690..2178702 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=910237 ABOX98_RS10530 WP_003138486.1 2174760..2175089(+) (comEA/comE1) [Pseudomonas aeruginosa strain SRPA1308]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=910237 ABOX98_RS10530 WP_003138486.1 2174760..2175089(+) (comEA/comE1) [Pseudomonas aeruginosa strain SRPA1308]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385