Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SD437_RS12590 Genome accession   NZ_CP139565
Coordinates   2527013..2527780 (-) Length   255 a.a.
NCBI ID   WP_063636710.1    Uniprot ID   -
Organism   Bacillus velezensis strain NCCP     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2522013..2532780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS12570 - 2522216..2523028 (-) 813 WP_071181854.1 pyruvate, water dikinase regulatory protein -
  SD437_RS12575 ccpN 2523054..2523692 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  SD437_RS12580 glyS 2523792..2525831 (-) 2040 WP_345912367.1 glycine--tRNA ligase subunit beta -
  SD437_RS12585 glyQ 2525824..2526711 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  SD437_RS12590 recO 2527013..2527780 (-) 768 WP_063636710.1 DNA repair protein RecO Machinery gene
  SD437_RS12595 - 2527817..2527960 (-) 144 WP_007408286.1 YqzL family protein -
  SD437_RS12600 era 2528116..2529021 (-) 906 WP_007408285.1 GTPase Era -
  SD437_RS12605 - 2529002..2529412 (-) 411 WP_003152976.1 cytidine deaminase -
  SD437_RS12610 - 2529536..2529910 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  SD437_RS12615 ybeY 2529891..2530364 (-) 474 WP_053284930.1 rRNA maturation RNase YbeY -
  SD437_RS12620 - 2530365..2532497 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29419.08 Da        Isoelectric Point: 8.7972

>NTDB_id=910229 SD437_RS12590 WP_063636710.1 2527013..2527780(-) (recO) [Bacillus velezensis strain NCCP]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSREG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=910229 SD437_RS12590 WP_063636710.1 2527013..2527780(-) (recO) [Bacillus velezensis strain NCCP]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGGCTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894