Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABOX98_RS03820 Genome accession   NZ_CP158570
Coordinates   784760..785257 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain SRPA1308     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 779760..790257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOX98_RS03805 (ABOX98_03805) bfr 779768..780232 (+) 465 WP_003093668.1 bacterioferritin -
  ABOX98_RS03810 (ABOX98_03810) uvrA 780304..783141 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  ABOX98_RS03815 (ABOX98_03815) - 783355..784743 (+) 1389 WP_031686858.1 MFS transporter -
  ABOX98_RS03820 (ABOX98_03820) ssb 784760..785257 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  ABOX98_RS03825 (ABOX98_03825) pchA 785346..786776 (-) 1431 WP_031686860.1 isochorismate synthase PchA -
  ABOX98_RS03830 (ABOX98_03830) pchB 786773..787078 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  ABOX98_RS03835 (ABOX98_03835) pchC 787078..787833 (-) 756 WP_015502297.1 pyochelin biosynthesis editing thioesterase PchC -
  ABOX98_RS03840 (ABOX98_03840) pchD 787830..789473 (-) 1644 WP_031686861.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=910229 ABOX98_RS03820 WP_003114685.1 784760..785257(+) (ssb) [Pseudomonas aeruginosa strain SRPA1308]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=910229 ABOX98_RS03820 WP_003114685.1 784760..785257(+) (ssb) [Pseudomonas aeruginosa strain SRPA1308]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515