Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABOX98_RS01925 Genome accession   NZ_CP158570
Coordinates   417409..418752 (+) Length   447 a.a.
NCBI ID   WP_033995172.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SRPA1308     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412409..423752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOX98_RS01905 (ABOX98_01905) - 413246..413812 (-) 567 WP_003084491.1 hypothetical protein -
  ABOX98_RS01910 (ABOX98_01910) rsmD 413815..414411 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABOX98_RS01915 (ABOX98_01915) - 414411..415898 (-) 1488 WP_019485883.1 pitrilysin family protein -
  ABOX98_RS01920 (ABOX98_01920) - 415891..417288 (-) 1398 WP_003084498.1 pitrilysin family protein -
  ABOX98_RS01925 (ABOX98_01925) pilA 417409..418752 (+) 1344 WP_033995172.1 signal recognition particle-docking protein FtsY Machinery gene
  ABOX98_RS01930 (ABOX98_01930) ftsE 418749..419420 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  ABOX98_RS01935 (ABOX98_01935) ftsX 419420..420427 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  ABOX98_RS01940 (ABOX98_01940) rpoH 420541..421395 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  ABOX98_RS01945 (ABOX98_01945) - 421460..422065 (+) 606 WP_003084511.1 hypothetical protein -
  ABOX98_RS01950 (ABOX98_01950) mtgA 422070..422801 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ABOX98_RS01955 (ABOX98_01955) - 422838..423215 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  ABOX98_RS01960 (ABOX98_01960) thiS 423318..423518 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 47476.85 Da        Isoelectric Point: 4.6393

>NTDB_id=910218 ABOX98_RS01925 WP_033995172.1 417409..418752(+) (pilA) [Pseudomonas aeruginosa strain SRPA1308]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAESAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGM
ASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVARE
PYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAK
ARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTA
KGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=910218 ABOX98_RS01925 WP_033995172.1 417409..418752(+) (pilA) [Pseudomonas aeruginosa strain SRPA1308]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGTCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCG
AGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATG
GCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGT
CGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGC
TGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAG
CCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACT
CGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGC
GCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAG
GCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAA
GGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGA
ACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCC
AAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGA
TCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(157-222)

SRP54-type protein, GTPase domain (SRP54)

(242-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.786

95.973

0.459