Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SD437_RS11015 Genome accession   NZ_CP139565
Coordinates   2195903..2196511 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain NCCP     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2190903..2201511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS10975 - 2191922..2192428 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  SD437_RS10980 - 2192567..2192986 (+) 420 WP_340230312.1 Hsp20/alpha crystallin family protein -
  SD437_RS10985 - 2193010..2193477 (-) 468 WP_345912347.1 YppG family protein -
  SD437_RS10990 - 2193664..2193846 (+) 183 WP_003153532.1 YppF family protein -
  SD437_RS10995 - 2193886..2194254 (-) 369 WP_029326132.1 YppE family protein -
  SD437_RS11000 - 2194300..2194545 (-) 246 WP_134986529.1 DUF5446 family protein -
  SD437_RS11005 sspM 2194751..2194855 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  SD437_RS11010 - 2194899..2195861 (-) 963 WP_063636681.1 DUF2515 domain-containing protein -
  SD437_RS11015 recU 2195903..2196511 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  SD437_RS11020 - 2196550..2199422 (+) 2873 Protein_2120 PBP1A family penicillin-binding protein -
  SD437_RS11025 - 2199501..2199992 (-) 492 WP_012117839.1 YpoC family protein -
  SD437_RS11030 nth 2199989..2200648 (-) 660 WP_007612187.1 endonuclease III -
  SD437_RS11035 dnaD 2200667..2201365 (-) 699 WP_017418023.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=910218 SD437_RS11015 WP_003153521.1 2195903..2196511(+) (recU) [Bacillus velezensis strain NCCP]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=910218 SD437_RS11015 WP_003153521.1 2195903..2196511(+) (recU) [Bacillus velezensis strain NCCP]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896