Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SD437_RS07525 Genome accession   NZ_CP139565
Coordinates   1444055..1444339 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain NCCP     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439055..1449339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS07505 - 1440301..1441209 (+) 909 WP_022553408.1 ketopantoate reductase family protein -
  SD437_RS07510 - 1441238..1442470 (-) 1233 WP_007409644.1 aminopeptidase -
  SD437_RS07515 - 1442571..1442705 (-) 135 WP_003154559.1 protein YkpC -
  SD437_RS07520 mreBH 1442777..1443784 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  SD437_RS07525 abrB 1444055..1444339 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SD437_RS07530 - 1444512..1445816 (+) 1305 WP_014417634.1 ATP-binding protein -
  SD437_RS07535 - 1445818..1446645 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  SD437_RS07540 ktrC 1446686..1447351 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  SD437_RS07545 ade 1447500..1449233 (+) 1734 WP_345913704.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=910212 SD437_RS07525 WP_014417633.1 1444055..1444339(+) (abrB) [Bacillus velezensis strain NCCP]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=910212 SD437_RS07525 WP_014417633.1 1444055..1444339(+) (abrB) [Bacillus velezensis strain NCCP]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543