Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   SD437_RS07315 Genome accession   NZ_CP139565
Coordinates   1407695..1408159 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus velezensis strain NCCP     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402695..1413159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS07295 - 1403176..1404996 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  SD437_RS07300 - 1405021..1406190 (-) 1170 WP_007611083.1 aminotransferase A -
  SD437_RS07305 - 1406391..1406552 (-) 162 WP_007409608.1 hypothetical protein -
  SD437_RS07310 cheV 1406741..1407652 (+) 912 WP_017417674.1 chemotaxis protein CheV -
  SD437_RS07315 kre 1407695..1408159 (-) 465 WP_014417605.1 YkyB family protein Regulator
  SD437_RS07320 - 1408282..1409574 (-) 1293 WP_014417606.1 MFS transporter -
  SD437_RS07325 - 1409650..1410144 (-) 495 WP_088056573.1 L,D-transpeptidase family protein -
  SD437_RS07330 - 1410219..1411082 (-) 864 WP_053285009.1 metallophosphoesterase -
  SD437_RS07335 fadH 1411226..1411990 (+) 765 WP_014417609.1 2,4-dienoyl-CoA reductase -
  SD437_RS07340 - 1412104..1412652 (+) 549 WP_345913693.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=910210 SD437_RS07315 WP_014417605.1 1407695..1408159(-) (kre) [Bacillus velezensis strain NCCP]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=910210 SD437_RS07315 WP_014417605.1 1407695..1408159(-) (kre) [Bacillus velezensis strain NCCP]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929