Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SD437_RS04330 Genome accession   NZ_CP139565
Coordinates   852485..853276 (+) Length   263 a.a.
NCBI ID   WP_345913375.1    Uniprot ID   -
Organism   Bacillus velezensis strain NCCP     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 847485..858276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS04305 - 849479..850363 (+) 885 WP_017419144.1 PhzF family phenazine biosynthesis isomerase -
  SD437_RS04310 - 850440..851024 (+) 585 WP_017419145.1 nitroreductase -
  SD437_RS04315 - 851064..851255 (-) 192 WP_003155508.1 YfhD family protein -
  SD437_RS04320 - 851326..851436 (-) 111 WP_003155504.1 YfhE family protein -
  SD437_RS04325 - 851494..852393 (-) 900 WP_134986419.1 TIGR01777 family oxidoreductase -
  SD437_RS04330 recX 852485..853276 (+) 792 WP_345913375.1 recombination regulator RecX Regulator
  SD437_RS04335 - 853283..853597 (+) 315 WP_007408553.1 YfhH family protein -
  SD437_RS04340 - 853742..854935 (+) 1194 WP_029973982.1 MFS transporter -
  SD437_RS04345 - 854975..855364 (-) 390 WP_014417236.1 DUF2606 family protein -
  SD437_RS04350 - 855327..856238 (-) 912 WP_025650228.1 serine protease -
  SD437_RS04355 - 856383..856535 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  SD437_RS04360 - 856659..856928 (+) 270 WP_003155492.1 YfhJ family protein -
  SD437_RS04365 - 857060..857587 (+) 528 WP_014417238.1 SH3 domain-containing protein -
  SD437_RS04370 - 857673..858008 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31005.20 Da        Isoelectric Point: 6.2735

>NTDB_id=910194 SD437_RS04330 WP_345913375.1 852485..853276(+) (recX) [Bacillus velezensis strain NCCP]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLNAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=910194 SD437_RS04330 WP_345913375.1 852485..853276(+) (recX) [Bacillus velezensis strain NCCP]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCGGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCATGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGATATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCATAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAACGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787