Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   SD437_RS02045 Genome accession   NZ_CP139565
Coordinates   408135..408254 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain NCCP     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 403135..413254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS02030 - 404747..405430 (+) 684 WP_014416901.1 response regulator transcription factor -
  SD437_RS02035 - 405417..406844 (+) 1428 WP_103527150.1 HAMP domain-containing sensor histidine kinase -
  SD437_RS02040 rapC 407003..408151 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  SD437_RS02045 phrC 408135..408254 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SD437_RS02050 - 408404..408499 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  SD437_RS02055 - 408594..409958 (-) 1365 WP_053285479.1 aspartate kinase -
  SD437_RS02060 ceuB 410371..411324 (+) 954 WP_014416904.1 ABC transporter permease Machinery gene
  SD437_RS02065 - 411314..412261 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  SD437_RS02070 - 412255..413013 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=910191 SD437_RS02045 WP_003156334.1 408135..408254(+) (phrC) [Bacillus velezensis strain NCCP]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=910191 SD437_RS02045 WP_003156334.1 408135..408254(+) (phrC) [Bacillus velezensis strain NCCP]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718