Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SD437_RS00250 Genome accession   NZ_CP139565
Coordinates   45543..45833 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain NCCP     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40543..50833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS00210 darA 40559..40888 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  SD437_RS00215 - 40901..41341 (+) 441 WP_004264730.1 DUF327 family protein -
  SD437_RS00220 holB 41353..42342 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  SD437_RS00225 ricT 42345..43172 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  SD437_RS00230 yabA 43187..43546 (+) 360 WP_017419498.1 replication initiation-control protein YabA -
  SD437_RS00235 - 43607..44350 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SD437_RS00240 - 44337..44636 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  SD437_RS00245 rsmI 44611..45492 (+) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SD437_RS00250 abrB 45543..45833 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  SD437_RS00255 metG 46316..48307 (+) 1992 WP_025650337.1 methionine--tRNA ligase -
  SD437_RS00260 - 48388..49155 (+) 768 WP_345913948.1 TatD family hydrolase -
  SD437_RS00265 - 49290..50615 (+) 1326 WP_104843579.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=910183 SD437_RS00250 WP_169510469.1 45543..45833(-) (abrB) [Bacillus velezensis strain NCCP]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=910183 SD437_RS00250 WP_169510469.1 45543..45833(-) (abrB) [Bacillus velezensis strain NCCP]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979