Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABRU06_RS15265 Genome accession   NZ_CP158503
Coordinates   3134574..3135014 (+) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain E-ge-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3129574..3140014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRU06_RS15245 (ABRU06_15255) aroP 3130572..3131945 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  ABRU06_RS15250 (ABRU06_15260) ampE 3131988..3132842 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  ABRU06_RS15255 (ABRU06_15265) ampD 3132839..3133390 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABRU06_RS15260 (ABRU06_15270) nadC 3133478..3134371 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABRU06_RS15265 (ABRU06_15275) pilA 3134574..3135014 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  ABRU06_RS15270 (ABRU06_15280) pilB 3135024..3136409 (+) 1386 WP_001025145.1 type II secretion system protein GspE Machinery gene
  ABRU06_RS15275 (ABRU06_15285) hofC 3136399..3137601 (+) 1203 WP_000157266.1 protein transport protein HofC -
  ABRU06_RS15280 (ABRU06_15290) guaC 3137636..3138679 (-) 1044 WP_001217338.1 GMP reductase -
  ABRU06_RS15285 (ABRU06_15295) - 3138835..3138879 (-) 45 WP_120795372.1 protein YacM -
  ABRU06_RS15290 (ABRU06_15300) coaE 3138904..3139524 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=910180 ABRU06_RS15265 WP_000360904.1 3134574..3135014(+) (pilA) [Escherichia coli strain E-ge-1]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=910180 ABRU06_RS15265 WP_000360904.1 3134574..3135014(+) (pilA) [Escherichia coli strain E-ge-1]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363