Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SD440_RS20360 Genome accession   NZ_CP139561
Coordinates   3920269..3920811 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus altitudinis strain NCCP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3915269..3925811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS20335 - 3915542..3916153 (-) 612 WP_058214363.1 alpha/beta hydrolase -
  SD440_RS20340 - 3916150..3917100 (-) 951 WP_017359878.1 ring-cleaving dioxygenase -
  SD440_RS20345 - 3917313..3918830 (-) 1518 WP_050826816.1 ABC transporter permease/substrate-binding protein -
  SD440_RS20350 - 3918823..3919788 (-) 966 WP_345911615.1 ABC transporter ATP-binding protein -
  SD440_RS20355 rpsR 3919988..3920227 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  SD440_RS20360 ssbA 3920269..3920811 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  SD440_RS20365 rpsF 3920848..3921135 (-) 288 WP_008347557.1 30S ribosomal protein S6 -
  SD440_RS20370 ychF 3921244..3922344 (-) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  SD440_RS20375 - 3922560..3922766 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  SD440_RS20380 - 3923061..3924380 (+) 1320 WP_345911620.1 hydrolase -
  SD440_RS20385 - 3924396..3924806 (+) 411 WP_007497462.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=910180 SD440_RS20360 WP_007497456.1 3920269..3920811(-) (ssbA) [Bacillus altitudinis strain NCCP]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=910180 SD440_RS20360 WP_007497456.1 3920269..3920811(-) (ssbA) [Bacillus altitudinis strain NCCP]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361