Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SD440_RS12565 Genome accession   NZ_CP139561
Coordinates   2412788..2413558 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2407788..2418558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS12545 - 2407881..2408702 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  SD440_RS12550 - 2408728..2409366 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  SD440_RS12555 glyS 2409533..2411578 (-) 2046 WP_171465586.1 glycine--tRNA ligase subunit beta -
  SD440_RS12560 glyQ 2411571..2412458 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  SD440_RS12565 recO 2412788..2413558 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  SD440_RS12570 - 2413594..2413737 (-) 144 WP_008342408.1 YqzL family protein -
  SD440_RS12575 era 2413885..2414790 (-) 906 WP_007501305.1 GTPase Era -
  SD440_RS12580 - 2414783..2415181 (-) 399 WP_008342410.1 cytidine deaminase -
  SD440_RS12585 - 2415294..2415680 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  SD440_RS12590 ybeY 2415658..2416137 (-) 480 WP_017358013.1 rRNA maturation RNase YbeY -
  SD440_RS12595 - 2416138..2418228 (-) 2091 WP_242732075.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=910157 SD440_RS12565 WP_007501304.1 2412788..2413558(-) (recO) [Bacillus altitudinis strain NCCP]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=910157 SD440_RS12565 WP_007501304.1 2412788..2413558(-) (recO) [Bacillus altitudinis strain NCCP]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758