Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SD440_RS09860 Genome accession   NZ_CP139561
Coordinates   1901952..1902332 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1896952..1907332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS09825 - 1897541..1897771 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  SD440_RS09830 - 1897841..1898488 (-) 648 WP_017359583.1 recombinase family protein -
  SD440_RS09835 yneA 1898506..1898817 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  SD440_RS09840 lexA 1898977..1899597 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  SD440_RS09845 - 1899645..1900088 (-) 444 WP_008343821.1 hypothetical protein -
  SD440_RS09850 - 1900385..1900927 (+) 543 WP_345912298.1 IseA DL-endopeptidase inhibitor family protein -
  SD440_RS09855 - 1900960..1901808 (-) 849 WP_017367323.1 STAS domain-containing protein -
  SD440_RS09860 nucA/comI 1901952..1902332 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SD440_RS09865 - 1902560..1904554 (-) 1995 WP_345912299.1 glycosyltransferase family 39 protein -
  SD440_RS09870 - 1904701..1905609 (-) 909 WP_048001486.1 trypsin-like serine protease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=910150 SD440_RS09860 WP_224559893.1 1901952..1902332(-) (nucA/comI) [Bacillus altitudinis strain NCCP]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=910150 SD440_RS09860 WP_224559893.1 1901952..1902332(-) (nucA/comI) [Bacillus altitudinis strain NCCP]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCAGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556