Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SD440_RS07745 Genome accession   NZ_CP139561
Coordinates   1490732..1491010 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain NCCP     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485732..1496010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS07720 - 1485823..1486098 (-) 276 WP_008345136.1 hypothetical protein -
  SD440_RS07725 - 1486243..1487862 (+) 1620 WP_007498620.1 ATP-binding cassette domain-containing protein -
  SD440_RS07730 - 1487903..1489135 (-) 1233 WP_345912244.1 aminopeptidase -
  SD440_RS07735 - 1489242..1489373 (-) 132 WP_003210922.1 protein YkpC -
  SD440_RS07740 mreBH 1489448..1490455 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  SD440_RS07745 abrB 1490732..1491010 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SD440_RS07750 - 1491155..1492444 (+) 1290 WP_017359399.1 ATP-binding protein -
  SD440_RS07755 - 1492472..1493314 (+) 843 WP_046343442.1 gamma-glutamylcyclotransferase family protein -
  SD440_RS07760 - 1493352..1494020 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=910145 SD440_RS07745 WP_017359400.1 1490732..1491010(+) (abrB) [Bacillus altitudinis strain NCCP]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=910145 SD440_RS07745 WP_017359400.1 1490732..1491010(+) (abrB) [Bacillus altitudinis strain NCCP]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543