Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   SD440_RS07515 Genome accession   NZ_CP139561
Coordinates   1452081..1452542 (-) Length   153 a.a.
NCBI ID   WP_007498684.1    Uniprot ID   A0A9X0FXQ0
Organism   Bacillus altitudinis strain NCCP     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1447081..1457542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS07490 - 1447483..1448367 (+) 885 WP_039169114.1 cation diffusion facilitator family transporter -
  SD440_RS07495 - 1448433..1448585 (-) 153 WP_017367142.1 hypothetical protein -
  SD440_RS07500 - 1448886..1449425 (+) 540 WP_007498690.1 RDD family protein -
  SD440_RS07505 - 1449551..1450861 (+) 1311 WP_026050080.1 MFS transporter -
  SD440_RS07510 - 1450935..1451843 (+) 909 WP_008348035.1 chemotaxis protein -
  SD440_RS07515 kre 1452081..1452542 (-) 462 WP_007498684.1 YkyB family protein Regulator
  SD440_RS07520 - 1453020..1453235 (-) 216 WP_058337408.1 hypothetical protein -
  SD440_RS07525 - 1453401..1453577 (+) 177 WP_322536372.1 hypothetical protein -
  SD440_RS07530 - 1453802..1455079 (-) 1278 WP_345912242.1 MFS transporter -
  SD440_RS07535 - 1455153..1455650 (-) 498 WP_035700576.1 L,D-transpeptidase family protein -
  SD440_RS07540 - 1455807..1456664 (-) 858 WP_345912243.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17739.31 Da        Isoelectric Point: 10.2617

>NTDB_id=910143 SD440_RS07515 WP_007498684.1 1452081..1452542(-) (kre) [Bacillus altitudinis strain NCCP]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=910143 SD440_RS07515 WP_007498684.1 1452081..1452542(-) (kre) [Bacillus altitudinis strain NCCP]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGAGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771