Detailed information NTG0910142

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SD440_RS07340
• Genome accession: NZ_CP139561
• Coordinates: 1413479..1415584 (-)
• Length: 701 a.a.
• NCBI ID: WP_265154681.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain NCCP
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1408479..1420584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD440_RS07315	-	1408720..1408962 (+)	243	WP_008346101.1	aspartyl-phosphate phosphatase Spo0E family protein	-
SD440_RS07320	-	1409014..1410513 (-)	1500	WP_336749709.1	ATP-binding protein	-
SD440_RS07325	-	1410718..1411173 (+)	456	WP_003211701.1	MarR family transcriptional regulator	-
SD440_RS07330	motB	1411360..1412127 (-)	768	WP_024719648.1	flagellar motor protein MotB	-
SD440_RS07335	motA	1412120..1412914 (-)	795	WP_008346088.1	flagellar motor stator protein MotA	-
SD440_RS07340	clpC	1413479..1415584 (-)	2106	WP_265154681.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
SD440_RS07345	-	1415830..1416873 (+)	1044	WP_108611227.1	hypothetical protein	-
SD440_RS07350	queC	1417148..1417804 (+)	657	WP_008348090.1	7-cyano-7-deazaguanine synthase QueC	-
SD440_RS07355	queD	1417805..1418245 (+)	441	WP_024719651.1	6-carboxytetrahydropterin synthase QueD	-
SD440_RS07360	queE	1418238..1418969 (+)	732	WP_024719652.1	7-carboxy-7-deazaguanine synthase QueE	-
SD440_RS07365	queF	1418985..1419482 (+)	498	WP_024426839.1	preQ(1) synthase	-
SD440_RS07370	-	1419880..1420242 (-)	363	WP_048001621.1	winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 701 a.a.
• Molecular weight: 78180.73 Da
• Isoelectric Point: 5.1287

>NTDB_id=910142 SD440_RS07340 WP_265154681.1 1413479..1415584(-) (clpC) [Bacillus altitudinis strain NCCP]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVMVDEPTQDEAFEILKGIQDNYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide

• Length: 2106 bp

>NTDB_id=910142 SD440_RS07340 WP_265154681.1 1413479..1415584(-) (clpC) [Bacillus altitudinis strain NCCP]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAAATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCCGTCATGGTTGATGAGCCAACACAGGATGAAGCATTCGAGATATTAAAAGGCATTCAAGATAA
CTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATTGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTGCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCCGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTTTTCGTTGGACCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGCCAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (116-245)

• AAA lid domain (AAA_lid_9) (253-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (611-686)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-605)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.969	100	0.601
clpE	Streptococcus mutans UA159	56.376	100	0.599
clpE	Streptococcus pneumoniae Rx1	55.708	100	0.578
clpE	Streptococcus pneumoniae D39	55.708	100	0.578
clpE	Streptococcus pneumoniae R6	55.708	100	0.578
clpE	Streptococcus pneumoniae TIGR4	55.708	100	0.578
clpC	Bacillus subtilis subsp. subtilis str. 168	53.651	95.72	0.514
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.698	90.728	0.424
clpC	Streptococcus thermophilus LMD-9	44.427	92.154	0.409
clpC	Streptococcus thermophilus LMG 18311	44.272	92.154	0.408
clpC	Streptococcus pneumoniae TIGR4	44.479	90.442	0.402
clpC	Streptococcus pneumoniae Rx1	44.674	89.729	0.401
clpC	Streptococcus pneumoniae D39	44.674	89.729	0.401
clpC	Streptococcus mutans UA159	44.127	89.872	0.397