Detailed information NTG0910141

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRU06_RS01885
• Genome accession: NZ_CP158503
• Coordinates: 384546..385538 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081489.1
• Uniprot ID: -
• Organism: Escherichia coli strain E-ge-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 379546..390538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRU06_RS01855 (ABRU06_01855)	ispD	379607..380317 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRU06_RS01860 (ABRU06_01860)	ispF	380317..380796 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRU06_RS01865 (ABRU06_01865)	truD	380793..381842 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRU06_RS01870 (ABRU06_01870)	surE	381823..382584 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRU06_RS01875 (ABRU06_01875)	pcm	382578..383204 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRU06_RS01880 (ABRU06_01880)	nlpD	383389..384483 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ABRU06_RS01885 (ABRU06_01885)	rpoS	384546..385538 (+)	993	WP_000081489.1	RNA polymerase sigma factor RpoS	Regulator
ABRU06_RS01890 (ABRU06_01890)	ygbN	385632..386996 (-)	1365	WP_049254918.1	GntP family transporter	-
ABRU06_RS01895 (ABRU06_01895)	ygbM	387085..387861 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ABRU06_RS01900 (ABRU06_01900)	ygbL	387866..388504 (-)	639	WP_001278994.1	aldolase	-
ABRU06_RS01905 (ABRU06_01905)	otnK	388501..389763 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=910141 ABRU06_RS01885 WP_000081489.1 384546..385538(+) (rpoS) [Escherichia coli strain E-ge-1]
MSQNTLKIHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=910141 ABRU06_RS01885 WP_000081489.1 384546..385538(+) (rpoS) [Escherichia coli strain E-ge-1]
ATGAGTCAGAATACGCTGAAAATTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715