Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   SD440_RS06135 Genome accession   NZ_CP139561
Coordinates   1200054..1201019 (+) Length   321 a.a.
NCBI ID   WP_008348509.1    Uniprot ID   A0A9X0FWP2
Organism   Bacillus altitudinis strain NCCP     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195054..1206019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS06105 argF 1195377..1196327 (+) 951 WP_076821884.1 ornithine carbamoyltransferase -
  SD440_RS06110 - 1196431..1196610 (+) 180 WP_008348517.1 YjzC family protein -
  SD440_RS06115 - 1196780..1198045 (+) 1266 WP_148780243.1 MFS transporter -
  SD440_RS06120 - 1198165..1198359 (-) 195 WP_024720055.1 YjzD family protein -
  SD440_RS06125 - 1198572..1199312 (+) 741 WP_007499048.1 hypothetical protein -
  SD440_RS06130 - 1199388..1199963 (+) 576 WP_019743124.1 hypothetical protein -
  SD440_RS06135 med 1200054..1201019 (+) 966 WP_008348509.1 BMP family ABC transporter substrate-binding protein Regulator
  SD440_RS06140 comZ 1201031..1201228 (+) 198 WP_108611363.1 ComZ family protein Regulator
  SD440_RS06145 - 1201239..1201472 (-) 234 WP_108611364.1 hypothetical protein -
  SD440_RS06150 - 1201642..1202580 (+) 939 WP_007499042.1 beta-ketoacyl-ACP synthase III -
  SD440_RS06155 fabF 1202602..1203843 (+) 1242 WP_008348501.1 beta-ketoacyl-ACP synthase II -
  SD440_RS06160 - 1203921..1204712 (+) 792 WP_345912310.1 DUF2268 domain-containing protein -
  SD440_RS06165 - 1204886..1205866 (+) 981 WP_035392443.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35902.89 Da        Isoelectric Point: 5.9297

>NTDB_id=910135 SD440_RS06135 WP_008348509.1 1200054..1201019(+) (med) [Bacillus altitudinis strain NCCP]
MKYQRLVMIFSFLLLMLSACSQAPLKGHIEKVGLLVPDTINDQVWGTKGYKGLLNIQSTFGVDVYYKEGMVDKEKIVDAI
EEFHKKGVNLIIGHGNEYSEIFNLISEDYPKTQFITVNGGKPQADNVTNVTFKGEAMGFFGGMTAAHMSKTKKIGILATY
DWQSEVDGFIKGAKYQDEHVQVLAEFVENWDDADKAVNLYQKLKKQGVDVVYPAGDGYNIPVIEQIKNDNLSAIGYVTDQ
SNLGSHTVLTSTVQHVDKAYSIIAKKFNEGKLNEQGEYSFDFKEGVIEMGKFSSTIDRAFVKDIEKDIANYKKTGKLPNE
K

Nucleotide


Download         Length: 966 bp        

>NTDB_id=910135 SD440_RS06135 WP_008348509.1 1200054..1201019(+) (med) [Bacillus altitudinis strain NCCP]
ATGAAGTACCAGCGGCTTGTCATGATCTTTTCGTTCCTTCTTCTTATGCTATCTGCCTGCTCGCAGGCGCCGTTAAAAGG
ACATATTGAGAAGGTGGGTTTACTCGTCCCCGATACGATTAATGATCAAGTTTGGGGAACGAAAGGTTATAAAGGCTTAT
TAAATATCCAATCAACATTTGGTGTAGATGTTTATTATAAGGAAGGGATGGTCGACAAGGAGAAAATCGTTGATGCCATT
GAAGAATTTCATAAAAAAGGAGTCAATTTGATTATTGGCCATGGCAATGAATACAGCGAAATTTTCAACTTGATCAGTGA
AGATTATCCGAAAACACAATTTATCACGGTCAATGGAGGCAAGCCTCAAGCTGATAATGTCACAAACGTCACGTTTAAAG
GAGAAGCAATGGGCTTTTTCGGAGGCATGACAGCAGCACATATGTCCAAAACAAAAAAGATTGGTATTCTGGCTACATAT
GATTGGCAAAGTGAAGTAGACGGTTTTATCAAAGGTGCAAAATATCAGGACGAACATGTGCAAGTCCTAGCGGAATTTGT
CGAAAACTGGGATGATGCTGACAAAGCGGTGAACCTCTATCAAAAATTGAAAAAACAAGGTGTAGATGTTGTGTATCCAG
CAGGTGATGGTTATAATATCCCTGTCATTGAACAAATCAAAAACGACAATTTATCTGCGATCGGATATGTCACTGATCAA
TCCAACCTTGGAAGCCATACGGTGTTAACTAGCACAGTCCAGCATGTCGATAAAGCGTACAGTATCATTGCGAAGAAGTT
TAATGAAGGCAAGCTAAACGAACAAGGTGAGTACTCCTTTGACTTTAAAGAAGGAGTGATCGAAATGGGGAAATTTAGCT
CAACCATAGACCGCGCTTTTGTGAAAGACATTGAGAAGGATATTGCGAATTACAAAAAAACAGGCAAACTGCCAAATGAA
AAGTGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

64.65

97.819

0.632